Amante Gabriele, Sponer Judit E, Sponer Jiri, Saija Franz, Cassone Giuseppe
Department of Mathematical and Computer Science, Physical Sciences and Earth Sciences, Università degli Studi di Messina, V. le F. Stagno d'Alcontres 31, 98166 Messina, Italy.
Institute of Biophysics of the Czech Academy of Sciences (IBP-CAS), Kràlovopolskà 135, 61265 Brno, Czech Republic.
Entropy (Basel). 2022 Jul 22;24(8):1012. doi: 10.3390/e24081012.
The search for the chemical origins of life represents a long-standing and continuously debated enigma. Despite its exceptional complexity, in the last decades the field has experienced a revival, also owing to the exponential growth of the computing power allowing for efficiently simulating the behavior of matter-including its quantum nature-under disparate conditions found, e.g., on the primordial Earth and on Earth-like planetary systems (i.e., exoplanets). In this minireview, we focus on some advanced computational methods capable of efficiently solving the Schro¨dinger equation at different levels of approximation (i.e., density functional theory)-such as ab initio molecular dynamics-and which are capable to realistically simulate the behavior of matter under the action of energy sources available in prebiotic contexts. In addition, recently developed metadynamics methods coupled with first-principles simulations are here reviewed and exploited to answer to old enigmas and to propose novel scenarios in the exponentially growing research field embedding the study of the chemical origins of life.
探寻生命的化学起源是一个长期存在且不断引发争议的谜团。尽管其异常复杂,但在过去几十年里,该领域迎来了复兴,这也得益于计算能力呈指数级增长,从而能够在不同条件下(例如在原始地球和类地行星系统,即系外行星上)高效模拟物质的行为,包括其量子特性。在这篇微型综述中,我们聚焦于一些先进的计算方法,这些方法能够在不同近似水平(即密度泛函理论)下高效求解薛定谔方程,例如从头算分子动力学,并且能够逼真地模拟在生命起源前环境中可用能量源作用下物质的行为。此外,本文还对最近开发的与第一性原理模拟相结合的元动力学方法进行了综述和探讨,以解答古老的谜团,并在这个涵盖生命化学起源研究的指数级增长的研究领域中提出新的设想。