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人心果树(山榄科)微卫星标记的分离与鉴定及其在其他人心果属物种中的交叉扩增

Isolation and Characterization of Microsatellite Markers for Mimusops balata (Sapotaceae) and Cross-Amplification in Other Mimusops Species.

作者信息

Dafreville Stéphanie, Baider Cláudia, Florens F B Vincent, Lebreton Gérard, Rivière Eric, Strasberg Dominique, Chevallier Marie-Hélène

机构信息

CIRAD, UMR C53 PVBMT, Saint-Pierre 97410, La Réunion, France.

The Mauritius Herbarium, R. E. Vaughan Building, Agricultural Services, Ministry of Agro-Industry and Food Security, Réduit, Mauritius.

出版信息

Plants (Basel). 2012 Dec 17;1(2):100-5. doi: 10.3390/plants1020100.

Abstract

Mimusops balata (Sapotaceae) is an endemic tree species from La Réunion and Mauritius. Like many species growing in lowland forests in La Réunion, it has suffered from human disturbances. We developed twelve microsatellite markers for M. balata and tested cross-amplification in five other Mimusops species to have powerful tools for genetic diversity studies. Genotyping peaks were of very low quality for two loci and were consequently abandoned for the genetic diversity analyses. Ten microsatellite loci were tested on 34 individuals of M. balata from two natural populations. The number of alleles per locus ranged from one to seven. The observed and expected heterozygosity levels varied from 0.000 to 0.823, and from 0.000 to 0.812 respectively. Two loci deviated from the Hardy-Weinberg equilibrium. The presence of null alleles was detected for one of these two loci. Nine to ten loci cross-amplified reliably in Mauritian species, for the other three species, four to six loci show successful amplifications. These polymorphic microsatellite markers are now available for population genetic investigations in Mimusops species aiming to establish accurate guidelines for conservation managers.

摘要

钝叶桂(山榄科)是一种来自留尼汪岛和毛里求斯的特有树种。和许多生长在留尼汪岛低地森林中的物种一样,它也受到了人类活动的干扰。我们为钝叶桂开发了12个微卫星标记,并在其他5种钝叶桂属物种中测试了交叉扩增情况,以便为遗传多样性研究提供有力工具。两个位点的基因分型峰质量非常低,因此在遗传多样性分析中被舍弃。在来自两个自然种群的34个钝叶桂个体上测试了10个微卫星位点。每个位点的等位基因数量从1到7不等。观察到的杂合度水平和预期杂合度水平分别在0.000至0.823和0.000至0.812之间变化。两个位点偏离了哈迪-温伯格平衡。在这两个位点中的一个检测到无效等位基因的存在。在毛里求斯的物种中,9到10个位点能可靠地交叉扩增,对于其他三个物种,4到6个位点显示成功扩增。这些多态性微卫星标记现在可用于钝叶桂属物种的群体遗传学研究,旨在为保护管理人员制定准确的指导方针。

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