Giri Maria Grazia, Cavedon Carlo, Mazzarotto Renzo, Ferdeghini Marco
Medical Physics Unit, University Hospital of Verona, P.le Stefani 1, Verona 37126, Italy.
Radiation Oncology Unit, University Hospital of Verona, P.le Stefani 1, Verona 37126, Italy.
Med Phys. 2016 May;43(5):2491. doi: 10.1118/1.4947123.
The aim of this study was to implement a Dirichlet process mixture (DPM) model for automatic tumor edge identification on (18)F-fluorodeoxyglucose positron emission tomography ((18)F-FDG PET) images by optimizing the parameters on which the algorithm depends, to validate it experimentally, and to test its robustness.
The DPM model belongs to the class of the Bayesian nonparametric models and uses the Dirichlet process prior for flexible nonparametric mixture modeling, without any preliminary choice of the number of mixture components. The DPM algorithm implemented in the statistical software package R was used in this work. The contouring accuracy was evaluated on several image data sets: on an IEC phantom (spherical inserts with diameter in the range 10-37 mm) acquired by a Philips Gemini Big Bore PET-CT scanner, using 9 different target-to-background ratios (TBRs) from 2.5 to 70; on a digital phantom simulating spherical/uniform lesions and tumors, irregular in shape and activity; and on 20 clinical cases (10 lung and 10 esophageal cancer patients). The influence of the DPM parameters on contour generation was studied in two steps. In the first one, only the IEC spheres having diameters of 22 and 37 mm and a sphere of the digital phantom (41.6 mm diameter) were studied by varying the main parameters until the diameter of the spheres was obtained within 0.2% of the true value. In the second step, the results obtained for this training set were applied to the entire data set to determine DPM based volumes of all available lesions. These volumes were compared to those obtained by applying already known algorithms (Gaussian mixture model and gradient-based) and to true values, when available.
Only one parameter was found able to significantly influence segmentation accuracy (ANOVA test). This parameter was linearly connected to the uptake variance of the tested region of interest (ROI). In the first step of the study, a calibration curve was determined to automatically generate the optimal parameter from the variance of the ROI. This "calibration curve" was then applied to contour the whole data set. The accuracy (mean discrepancy between DPM model-based contours and reference contours) of volume estimation was below (1 ± 7)% on the whole data set (1 SD). The overlap between true and automatically segmented contours, measured by the Dice similarity coefficient, was 0.93 with a SD of 0.03.
The proposed DPM model was able to accurately reproduce known volumes of FDG concentration, with high overlap between segmented and true volumes. For all the analyzed inserts of the IEC phantom, the algorithm proved to be robust to variations in radius and in TBR. The main advantage of this algorithm was that no setting of DPM parameters was required in advance, since the proper setting of the only parameter that could significantly influence the segmentation results was automatically related to the uptake variance of the chosen ROI. Furthermore, the algorithm did not need any preliminary choice of the optimum number of classes to describe the ROIs within PET images and no assumption about the shape of the lesion and the uptake heterogeneity of the tracer was required.
本研究的目的是通过优化算法所依赖的参数,实现狄利克雷过程混合(DPM)模型,用于在(18)F - 氟脱氧葡萄糖正电子发射断层扫描((18)F - FDG PET)图像上自动识别肿瘤边缘,对其进行实验验证,并测试其鲁棒性。
DPM模型属于贝叶斯非参数模型类别,使用狄利克雷过程先验进行灵活的非参数混合建模,无需预先选择混合成分的数量。本研究使用了统计软件包R中实现的DPM算法。在几个图像数据集上评估了轮廓绘制精度:在由飞利浦Gemini大孔径PET - CT扫描仪采集的IEC体模(直径范围为10 - 37 mm的球形插入物)上,使用9种不同的靶本底比(TBR),范围从2.5到70;在模拟球形/均匀病变和肿瘤、形状和活性不规则的数字体模上;以及在20个临床病例(10例肺癌和10例食管癌患者)上。分两步研究了DPM参数对轮廓生成的影响。第一步,通过改变主要参数,仅研究直径为22和37 mm的IEC球体以及数字体模中的一个球体(直径41.6 mm),直到获得的球体直径在真实值的0.2%以内。第二步,将此训练集获得的结果应用于整个数据集,以确定基于DPM的所有可用病变的体积。将这些体积与通过应用已知算法(高斯混合模型和基于梯度的算法)获得的体积以及可用时的真实值进行比较。
仅发现一个参数能够显著影响分割精度(方差分析测试)。该参数与测试感兴趣区域(ROI)的摄取方差呈线性相关。在研究的第一步,确定了一条校准曲线,以便根据ROI的方差自动生成最佳参数。然后将这条“校准曲线”应用于整个数据集的轮廓绘制。在整个数据集(1个标准差)上,体积估计的精度(基于DPM模型的轮廓与参考轮廓之间的平均差异)低于(1 ± 7)%。通过骰子相似系数测量的真实轮廓与自动分割轮廓之间的重叠度为0.93,标准差为0.03。
所提出的DPM模型能够准确再现已知的FDG浓度体积,分割体积与真实体积之间具有高度重叠。对于IEC体模的所有分析插入物,该算法被证明对半径和TBR的变化具有鲁棒性。该算法的主要优点是无需预先设置DPM参数,因为唯一能够显著影响分割结果的参数的正确设置与所选ROI的摄取方差自动相关。此外,该算法无需预先选择用于描述PET图像中ROI的最佳类别数量,并且不需要对病变形状和示踪剂摄取异质性进行任何假设。