Messina Enzo, Sorokin Dimitry Y, Kublanov Ilya V, Toshchakov Stepan, Lopatina Anna, Arcadi Erika, Smedile Francesco, La Spada Gina, La Cono Violetta, Yakimov Michail M
Institute for Coastal Marine Environment, CNR, Messina, Italy.
Winogradsky Institute of Microbiology, Russian Academy of Sciences, Moscow, Russia ; Department of Biotechnology, Deft University of Technology, Delft, The Netherlands.
Stand Genomic Sci. 2016 May 13;11:35. doi: 10.1186/s40793-016-0155-9. eCollection 2016.
Strain M27-SA2 was isolated from the deep-sea salt-saturated anoxic lake Medee, which represents one of the most hostile extreme environments on our planet. On the basis of physiological studies and phylogenetic positioning this extremely halophilic euryarchaeon belongs to a novel genus 'Halanaeroarchaeum' within the family Halobacteriaceae. All members of this genus cultivated so far are strict anaerobes using acetate as the sole carbon and energy source and elemental sulfur as electron acceptor. Here we report the complete genome sequence of the strain M27-SA2 which is composed of a 2,129,244-bp chromosome and a 124,256-bp plasmid. This is the second complete genome sequence within the genus Halanaeroarchaeum. We demonstrate that genome of 'Halanaeroarchaeum sulfurireducens' M27-SA2 harbors complete metabolic pathways for acetate and sulfur catabolism and for de novo biosynthesis of 19 amino acids. The genomic analysis also reveals that 'Halanaeroarchaeum sulfurireducens' M27-SA2 harbors two prophage loci and one CRISPR locus, highly similar to that of Kulunda Steppe (Altai, Russia) isolate 'H. sulfurireducens' HSR2(T). The discovery of sulfur-respiring acetate-utilizing haloarchaeon in deep-sea hypersaline anoxic lakes has certain significance for understanding the biogeochemical functioning of these harsh ecosystems, which are incompatible with life for common organisms. Moreover, isolations of Halanaeroarchaeum members from geographically distant salt-saturated sites of different origin suggest a high degree of evolutionary success in their adaptation to this type of extreme biotopes around the world.
菌株M27-SA2是从深海盐饱和缺氧湖泊梅迪中分离出来的,该湖泊是地球上最恶劣的极端环境之一。基于生理学研究和系统发育定位,这种极端嗜盐的广古菌属于盐杆菌科内的一个新属“嗜盐厌氧古菌属”。到目前为止培养的该属所有成员都是严格厌氧菌,以乙酸盐作为唯一的碳源和能源,以元素硫作为电子受体。在此,我们报告了菌株M27-SA2的完整基因组序列,它由一条2,129,244 bp的染色体和一个124,256 bp的质粒组成。这是嗜盐厌氧古菌属内的第二个完整基因组序列。我们证明,“还原硫嗜盐厌氧古菌”M27-SA2的基因组具有乙酸盐和硫分解代谢以及19种氨基酸从头生物合成的完整代谢途径。基因组分析还表明,“还原硫嗜盐厌氧古菌”M27-SA2含有两个前噬菌体位点和一个CRISPR位点,与俄罗斯阿尔泰库伦达草原分离株“还原硫嗜盐厌氧古菌”HSR2(T)的高度相似。在深海高盐缺氧湖泊中发现利用乙酸盐进行硫呼吸的嗜盐古菌对于理解这些恶劣生态系统的生物地球化学功能具有一定意义,这些生态系统对于普通生物来说是无法生存的。此外,从地理上遥远的不同来源的盐饱和地点分离出嗜盐厌氧古菌属成员,表明它们在适应世界各地这种极端生物群落方面具有高度的进化成功性。