Department of Chemical Physics and Optics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 3, Prague 2, 121 16, Czech Republic.
Faculty of Chemistry and Chemical Technologyn University of Ljubljana, Večna pot 113, Ljubljana, 1000, Slovenia.
J Comput Chem. 2016 Jul 15;37(19):1766-80. doi: 10.1002/jcc.24373. Epub 2016 May 17.
Full optimizations of stationary points along the reaction coordinate for the hydration of several quinolone Ru(II) half-sandwich complexes were performed in water environment using the B3PW91/6-31+G(d)/PCM/UAKS method. The role of diffuse functions (especially on oxygen) was found crucial for correct geometries along the reaction coordinate. Single-point (SP) calculations were performed at the B3LYP/6-311++G(2df,2pd)/DPCM/saled-UAKS level. In the first part, two possible reaction mechanisms-associative and dissociative were compared. It was found that the dissociative mechanism of the hydration process is kinetically slightly preferred. Another important conclusion concerns the reaction channels. It was found that substitution of chloride ligand (abbreviated in the text as dechlorination reaction) represents energetically and kinetically the most feasible pathway. In the second part the same hydration reaction was explored for reactivity comparison of the Ru(II)-complexes with several derivatives of nalidixic acid: cinoxacin, ofloxacin, and (thio)nalidixic acid. The hydration process is about four orders of magnitude faster in a basic solution compared to neutral/acidic environment with cinoxacin and nalidixic acid as the most reactive complexes in the former and latter environments, respectively. The explored hydration reaction is in all cases endergonic; nevertheless the endergonicity is substantially lower (by ∼6 kcal/mol) in basic environment. © 2016 Wiley Periodicals, Inc.
采用 B3PW91/6-31+G(d)/PCM/UAKS 方法在水环境中对几个喹诺酮 Ru(II) 半三明治配合物的水合反应坐标上的稳定点进行了全优化。发现弥散函数(尤其是氧上的弥散函数)的作用对于反应坐标上的正确几何形状至关重要。在 B3LYP/6-311++G(2df,2pd)/DPCM/saled-UAKS 水平上进行单点 (SP) 计算。在第一部分中,比较了两种可能的反应机制-缔合和离解。发现水合过程的离解机制在动力学上略占优势。另一个重要的结论涉及反应通道。发现取代氯配体(在文中缩写为脱氯反应)代表最可行的能量和动力学途径。在第二部分中,还研究了相同的水合反应,以比较 Ru(II)-配合物与几种萘啶酸衍生物(西诺沙星、氧氟沙星和(硫)萘啶酸)的反应性。与中性/酸性环境相比,碱性溶液中的水合反应速度快约四个数量级,其中西诺沙星和萘啶酸分别是前一种和后一种环境中反应性最强的配合物。所探索的水合反应在所有情况下均为吸热反应;然而,在碱性环境中,吸热性大大降低(约 6 kcal/mol)。© 2016 Wiley Periodicals, Inc.