Šebesta Filip, Burda Jaroslav V
Department of Chemical Physics and Optics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 3, 121 16, Prague 2, Czech Republic.
Chemistry. 2016 Jan 18;22(3):1037-47. doi: 10.1002/chem.201503555. Epub 2015 Dec 10.
The reduction mechanism of [Pt(IV) (dach)Cl4 ] (dach=diaminocyclohexyl) in the presence of dGMP was studied. The first step is substitution of a chloro ligand by dGMP, followed by nucleophilic attack of a phosphate or sugar oxygen atom to the C8-position of guanine. Subsequent reduction forms the [Pt(II) (dach)Cl2 ] complex. The whole process is completed by a hydrolysis. Two different pathways for the substitution reaction were examined: a direct associative and a Basolo-Pearson autocatalytic mechanism. All the explored structures were optimized at the B3LYP-D3/6-31G(d) level and by using the COSMO solvation model with Klamt's radii. Single-point energetics was determined at the B3LYP-GD3BJ/6-311++G(2df,2pd)/PCM/scaled-UAKS level. Activation barriers were used for an estimation of the rate constants and these were compared with experimental values. It was found that the rate-determining step is the nucleophilic attack with a slightly faster performance in the 3'-dGMP branch than in the case of 5'-dGMP with activation barriers of 21.1 and 20.4 kcal mol(-1) (experimental: 23.8 and 23.2 kcal mol(-1) ). The reduction reaction is connected with an electron flow from guanine. The product of the reduction reaction is a chelate structure, which dissociates within the last reaction step, that is, a hydrolysis reaction. The whole redox process (substitution, reduction, and hydrolysis) is exergonic by 34 and 28 kcal mol(-1) for 5'-dGMP and 3'-dGMP, respectively.
研究了[Pt(IV)(二氨基环己基)Cl4](二氨基环己基=dach)在dGMP存在下的还原机制。第一步是dGMP取代氯配体,随后磷酸或糖氧原子对鸟嘌呤的C8位进行亲核攻击。随后的还原形成[Pt(II)(二氨基环己基)Cl2]配合物。整个过程通过水解完成。研究了取代反应的两种不同途径:直接缔合机制和巴索洛-皮尔逊自催化机制。所有探索的结构均在B3LYP-D3/6-31G(d)水平并使用具有克拉姆半径的COSMO溶剂化模型进行了优化。单点能量在B3LYP-GD3BJ/6-311++G(2df,2pd)/PCM/缩放-UAKS水平上确定。活化能垒用于估计速率常数,并将其与实验值进行比较。发现速率决定步骤是亲核攻击,3'-dGMP分支中的反应性能略快于5'-dGMP,活化能垒分别为21.1和20.4 kcal·mol-1(实验值:23.8和23.2 kcal·mol-1)。还原反应与来自鸟嘌呤的电子流有关。还原反应的产物是一种螯合结构,它在最后一个反应步骤即水解反应中解离。整个氧化还原过程(取代、还原和水解)对于5'-dGMP和3'-dGMP分别放热34和28 kcal·mol-1。