Martínez Patricia Murciano, Appeldoorn Maaike M, Gruppen Harry, Kabel Mirjam A
Laboratory of Food Chemistry, Wageningen University, Bornse Weilanden 9, 6708 WG Wageningen, The Netherlands.
DSM Biotechnology Center, Alexander Fleminglaan 1, 2613 AX Delft, The Netherlands.
Biotechnol Biofuels. 2016 May 18;9:105. doi: 10.1186/s13068-016-0519-9. eCollection 2016.
The production of biofuels and biochemicals from grass-type plant biomass requires a complete utilisation of the plant cellulose and hemicellulosic xylan via enzymatic degradation to their constituent monosaccharides. Generally, physical and/or thermochemical pretreatments are performed to enable access for the subsequent added carbohydrate-degrading enzymes. Nevertheless, partly substituted xylan structures remain after pretreatment, in particular the ones substituted with (4-O-methyl-)glucuronic acids (UAme). Hence, α-glucuronidases play an important role in the degradation of UAmexylan structures facilitating the complete utilisation of plant biomass. The characterisation of α-glucuronidases is a necessity to find the right enzymes to improve degradation of recalcitrant UAmexylan structures.
The mode-of-action of two α-glucuronidases was demonstrated, both obtained from the fungus Rasamsonia emersonii; one belonging to the glycoside hydrolase (GH) family 67 (ReGH67) and the other to GH115 (ReGH115). Both enzymes functioned optimal at around pH 4 and 70 °C. ReGH67 was able to release UAme from UAme-substituted xylo-oligosaccharides (UAmeXOS), but only the UAme linked to the non-reducing end xylosyl residue was cleaved. In particular, in a mixture of oligosaccharides, UAmeXOS having a degree of polymerisation (DP) of two were hydrolysed to a further extent than longer UAmeXOS (DP 3-4). On the contrary, ReGH115 was able to release UAme from both polymeric UAmexylan and UAmeXOS. ReGH115 cleaved UAme from both internal and non-reducing end xylosyl residues, with the exception of UAme attached to the non-reducing end of a xylotriose oligosaccharide.
In this research, and for the first time, we define the mode-of-action of two α-glucuronidases from two different GH families both from the ascomycete R. emersonii. To date, only four α-glucuronidases classified in GH115 are characterised. ReGH67 showed limited substrate specificity towards only UAmeXOS, cleaving UAme only when attached to the non-reducing end xylosyl residue. ReGH115 was much less substrate specific compared to ReGH67, because UAme was released from both polymeric UAmexylan and UAmeXOS, from both internal and non-reducing end xylosyl residues. The characterisation of the mode-of-action of these two α-glucuronidases helps understand how R. emersonii attacks UAmexylan in plant biomass and the knowledge presented is valuable to improve enzyme cocktails for biorefinery applications.
利用草类植物生物质生产生物燃料和生物化学品需要通过酶促降解将植物纤维素和半纤维素木聚糖完全转化为其组成单糖。通常,需要进行物理和/或热化学预处理,以便后续添加的碳水化合物降解酶能够发挥作用。然而,预处理后仍会残留部分取代的木聚糖结构,特别是被(4-O-甲基-)葡萄糖醛酸(UAme)取代的结构。因此,α-葡萄糖醛酸酶在降解含UAme的木聚糖结构中发挥着重要作用,有助于实现植物生物质的完全利用。对α-葡萄糖醛酸酶进行表征对于找到合适的酶以改善难降解的含UAme木聚糖结构的降解至关重要。
研究证明了两种α-葡萄糖醛酸酶的作用模式,这两种酶均来自真菌艾默生拉氏菌;一种属于糖苷水解酶(GH)家族67(ReGH67),另一种属于GH115(ReGH115)。两种酶在pH约为4和70°C时功能最佳。ReGH67能够从含UAme的木寡糖(UAmeXOS)中释放出UAme,但仅能切割与非还原端木糖基残基相连的UAme。特别是在寡糖混合物中,聚合度(DP)为2的UAmeXOS比更长的UAmeXOS(DP 3-4)水解程度更高。相反,ReGH115能够从聚合的含UAme木聚糖和UAmeXOS中释放出UAme。ReGH115能从内部和非还原端木糖基残基上切割UAme,但与木三糖寡糖非还原端相连的UAme除外。
在本研究中,我们首次确定了来自子囊菌艾默生拉氏菌的两个不同GH家族的两种α-葡萄糖醛酸酶的作用模式。迄今为止,仅对归类于GH115的四种α-葡萄糖醛酸酶进行了表征。ReGH67对仅含UAme的木寡糖底物特异性有限,仅在UAme与非还原端木糖基残基相连时进行切割。与ReGH67相比,ReGH115的底物特异性低得多,因为它能从聚合的含UAme木聚糖和UAmeXOS中,从内部和非还原端木糖基残基上释放出UAme。这两种α-葡萄糖醛酸酶作用模式的表征有助于理解艾默生拉氏菌如何攻击植物生物质中的含UAme木聚糖,所提供的知识对于改进用于生物炼制应用的酶混合物具有重要价值。