多粘芽孢杆菌菌株CCI-25的基因组序列草图显示其具有产生次生代谢产物的高潜力。
The Draft Genome Sequence of Paenibacillus polymyxa Strain CCI-25 Encompasses High Potential for Secondary Metabolite Production.
作者信息
Aleti Gajender, Antonielli Livio, Corretto Erika, Nikolić Branislav, Sessitsch Angela, Brader Günter
机构信息
Bioresources Unit, Health and Environment Department, Austrian Institute of Technology (AIT), Tulln, Austria.
Bioresources Unit, Health and Environment Department, Austrian Institute of Technology (AIT), Tulln, Austria
出版信息
Genome Announc. 2016 May 19;4(3):e00366-16. doi: 10.1128/genomeA.00366-16.
Abstract
We report here the draft genome sequence of Paenibacillus polymyxa strain CCI-25, which displays strong antifungal and antibacterial activities in vitro The genome encompasses nonribosomal peptide synthetases predicted to encode a tridecaptin, polymyxin, fusaricidin, an iturin-like synthetase, a lantibiotic similar to paenicidin A, as well as a type 1 polyketide synthase.
摘要
我们在此报告多粘芽孢杆菌菌株CCI-25的基因组序列草图，该菌株在体外表现出强大的抗真菌和抗菌活性。该基因组包含预测可编码十三肽菌素、多粘菌素、杀镰孢菌素、一种iturin样合成酶、一种与芽孢杆菌素A相似的羊毛硫抗生素以及一种I型聚酮合酶的非核糖体肽合成酶。
相似文献
1
The Draft Genome Sequence of Paenibacillus polymyxa Strain CCI-25 Encompasses High Potential for Secondary Metabolite Production.
Genome Announc. 2016 May 19;4(3):e00366-16. doi: 10.1128/genomeA.00366-16.
2
Draft genome sequence data of strain TH2H2, isolated from a tomato flower in Korea.
Data Brief. 2020 Jun 10;31:105824. doi: 10.1016/j.dib.2020.105824. eCollection 2020 Aug.
3
Draft Genome Sequences of Paenibacillus polymyxa NRRL B-30509 and Paenibacillus terrae NRRL B-30644, Strains from a Poultry Environment That Produce Tridecaptin A and Paenicidins.
Genome Announc. 2015 Apr 23;3(2):e00372-15. doi: 10.1128/genomeA.00372-15.
4
Draft Genome Sequence of Paenibacillus polymyxa KF-1, an Excellent Producer of Microbicides.
Genome Announc. 2016 Aug 4;4(4):e00727-16. doi: 10.1128/genomeA.00727-16.
5
Draft genome sequence of Paenibacillus polymyxa OSY-DF, which coproduces a lantibiotic, paenibacillin, and polymyxin E1.
J Bacteriol. 2012 Sep;194(17):4739-40. doi: 10.1128/JB.00846-12.
6
Chronicle of a Soil Bacterium: E681 as a Tiny Guardian of Plant and Human Health.
Front Microbiol. 2019 Mar 15;10:467. doi: 10.3389/fmicb.2019.00467. eCollection 2019.
7
Genome analysis reveals probiotic propensities of Paenibacillus polymyxa HK4.
Genomics. 2021 Jan;113(1 Pt 2):861-873. doi: 10.1016/j.ygeno.2020.10.017. Epub 2020 Oct 21.
8
Isolation and genome characterization of Paenibacillus polymyxa 188, a potential biocontrol agent against fungi.
J Appl Microbiol. 2024 Apr 1;135(4). doi: 10.1093/jambio/lxae075.
9
Use of PCR-targeted mutagenesis to disrupt production of fusaricidin-type antifungal antibiotics in Paenibacillus polymyxa.
Appl Environ Microbiol. 2007 Jun;73(11):3480-9. doi: 10.1128/AEM.02662-06. Epub 2007 Mar 30.
10
Identification and functional analysis of the fusaricidin biosynthetic gene of Paenibacillus polymyxa E681.
Biochem Biophys Res Commun. 2008 Jan 4;365(1):89-95. doi: 10.1016/j.bbrc.2007.10.147. Epub 2007 Oct 31.
引用本文的文献
1
Transcriptomics differentiate two novel bioactive strains of Paenibacillus sp. isolated from the perennial ryegrass seed microbiome.
Sci Rep. 2021 Jul 30;11(1):15545. doi: 10.1038/s41598-021-94820-2.
2
The Discovery of New Antilisterial Proteins From Kp10 via Genome Mining and Mass Spectrometry.
Front Microbiol. 2020 Jul 2;11:960. doi: 10.3389/fmicb.2020.00960. eCollection 2020.
本文引用的文献
1
Genome mining: Prediction of lipopeptides and polyketides from Bacillus and related Firmicutes.
Comput Struct Biotechnol J. 2015 Mar 24;13:192-203. doi: 10.1016/j.csbj.2015.03.003. eCollection 2015.
2
Isolation and identification of cyclic lipopeptides from Paenibacillus ehimensis, strain IB-X-b.
J Chromatogr B Analyt Technol Biomed Life Sci. 2014 Dec 15;973C:9-16. doi: 10.1016/j.jchromb.2014.09.042. Epub 2014 Oct 8.
3
Paenilarvins: Iturin family lipopeptides from the honey bee pathogen Paenibacillus larvae.
Chembiochem. 2014 Sep 5;15(13):1947-55. doi: 10.1002/cbic.201402139. Epub 2014 Jul 28.
4
Trimmomatic: a flexible trimmer for Illumina sequence data.
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
5
PhyloSift: phylogenetic analysis of genomes and metagenomes.
PeerJ. 2014 Jan 9;2:e243. doi: 10.7717/peerj.243. eCollection 2014.
6
Biochemical, structural, and genetic characterization of tridecaptin A₁, an antagonist of Campylobacter jejuni.
Chembiochem. 2014 Jan 24;15(2):243-9. doi: 10.1002/cbic.201300595. Epub 2013 Dec 30.
7
antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers.
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W204-12. doi: 10.1093/nar/gkt449. Epub 2013 Jun 3.
8
QUAST: quality assessment tool for genome assemblies.
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
9
Structural characterization of the highly cyclized lantibiotic paenicidin A via a partial desulfurization/reduction strategy.
J Am Chem Soc. 2012 Dec 5;134(48):19540-3. doi: 10.1021/ja3089229. Epub 2012 Nov 20.
10
Qualimap: evaluating next-generation sequencing alignment data.
Bioinformatics. 2012 Oct 15;28(20):2678-9. doi: 10.1093/bioinformatics/bts503. Epub 2012 Aug 22.
Zotero 插件