Goodman Myron F, McDonald John P, Jaszczur Malgorzata M, Woodgate Roger
Departments of Biological Sciences and Chemistry, University of Southern California, University Park, Los Angeles, CA 90089-2910, USA.
Laboratory of Genomic Integrity, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892-3371, USA.
DNA Repair (Amst). 2016 Aug;44:42-50. doi: 10.1016/j.dnarep.2016.05.005. Epub 2016 May 13.
It is now close to 40 years since the isolation of non-mutable umu/uvm strains of Escherichia coli and the realization that damage induced mutagenesis in E.coli is not a passive process. Early models of mutagenesis envisioned the Umu proteins as accessory factors to the cell's replicase that not only reduced its normally high fidelity, but also allowed the enzyme to traverse otherwise replication-blocking lesions in the genome. However, these models underwent a radical revision approximately 15 years ago, with the discovery that the Umu proteins actually encode for a DNA polymerase, E.coli pol V. The polymerase lacks 3'→5' exonucleolytic proofreading activity and is inherently error-prone when replicating both undamaged and damage DNA. So as to limit any "gratuitous" mutagenesis, the activity of pol V is strictly regulated in the cell at multiple levels. This review will summarize our current understanding of the myriad levels of regulation imposed on pol V including transcriptional control, posttranslational modification, targeted proteolysis, activation of the catalytic activity of pol V through protein-protein interactions and the very recently described intracellular spatial regulation of pol V. Remarkably, despite the multiple levels at which pol V is regulated, the enzyme is nevertheless able to contribute to the genetic diversity and evolutionary fitness of E.coli.
自分离出大肠杆菌的非突变型umu/uvm菌株,并认识到大肠杆菌中损伤诱导的诱变不是一个被动过程以来,现已接近40年。早期的诱变模型将Umu蛋白设想为细胞复制酶的辅助因子,它不仅降低了其通常的高保真度,还使该酶能够跨越基因组中原本会阻碍复制的损伤。然而,大约15年前,随着Umu蛋白实际上编码一种DNA聚合酶——大肠杆菌聚合酶V的发现,这些模型经历了彻底的修订。该聚合酶缺乏3'→5'核酸外切酶校对活性,在复制未损伤和损伤的DNA时都固有地容易出错。为了限制任何“无端”的诱变,聚合酶V的活性在细胞内受到多个层面的严格调控。本综述将总结我们目前对聚合酶V所受多种调控水平的理解,包括转录控制、翻译后修饰、靶向蛋白水解、通过蛋白质-蛋白质相互作用激活聚合酶V的催化活性以及最近描述的聚合酶V的细胞内空间调控。值得注意的是,尽管聚合酶V受到多个层面的调控,但该酶仍然能够促进大肠杆菌的遗传多样性和进化适应性。