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本文引用的文献

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rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development.rrnDB：用于解释细菌和古细菌中rRNA基因丰度的改进工具以及未来发展的新基础。
Nucleic Acids Res. 2015 Jan;43(Database issue):D593-8. doi: 10.1093/nar/gku1201. Epub 2014 Nov 20.
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Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
3
Fast gapped-read alignment with Bowtie 2.快速缺口读对准与 Bowtie 2。
Nat Methods. 2012 Mar 4;9(4):357-9. doi: 10.1038/nmeth.1923.
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Rathayibacter caricis sp. nov. and Rathayibacter festucae sp. nov., isolated from the phyllosphere of Carex sp. and the leaf gall induced by the nematode Anguina graminis on Festuca rubra L., respectively.新种香蒲拉氏杆菌和新种羊茅拉氏杆菌，分别从苔草属植物的叶际和由禾本科粒线虫诱导的紫羊茅叶瘿中分离得到。
Int J Syst Evol Microbiol. 2002 Nov;52(Pt 6):1917-1923. doi: 10.1099/00207713-52-6-1917.

从受叶线虫侵染的普通菊蒿中分离出的“菊黄欧文氏菌”菌株VKM Ac-2596的基因组序列草图

Draft Genome Sequence of "Rathayibacter tanaceti" Strain VKM Ac-2596 Isolated from Tanacetum vulgare Infested by a Foliar Nematode.

作者信息

Vasilenko Oleg V, Starodumova Irina P, Tarlachkov Sergey V, Dorofeeva Lubov V, Avtukh Alexander N, Evtushenko Lyudmila I

机构信息

All-Russian Collection of Microorganisms (VKM), GK Skryabin Institute of Biochemistry and Physiology of Microorganisms, Pushchino, Russia

All-Russian Collection of Microorganisms (VKM), GK Skryabin Institute of Biochemistry and Physiology of Microorganisms, Pushchino, Russia Pushchino State Institute of Natural Sciences, Pushchino, Russia.

出版信息

Genome Announc. 2016 Jun 16;4(3):e00512-16. doi: 10.1128/genomeA.00512-16.

DOI:10.1128/genomeA.00512-16
PMID:27313291
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4911470/
Abstract

The draft genome of "Rathayibacter tanaceti" VKM Ac-2596 is 3.17 Mb in size with an average G+C content of 70.7% and comprises at least two nonidentical copies of ribosomal small subunit (SSU-rRNA) genes. The semiconductor sequencing platform Ion Torrent was used.

摘要

“菊欧文氏菌”VKM Ac-2596的基因组草图大小为3.17 Mb，平均G+C含量为70.7%，包含至少两个核糖体小亚基（SSU-rRNA）基因的非相同拷贝。使用了半导体测序平台Ion Torrent。