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水溶液中硝酰基分解机理的理论研究

Theoretical investigation of the mechanism of nitroxyl decomposition in aqueous solution.

作者信息

Bringas Mauro, Semelak Jonathan, Zeida Ari, Estrin Dario A

机构信息

DQIAyQF, INQUIMAE-CONICET, FCEN UBA, Ciudad Universitaria, Pab. 2, CP, 1428 Buenos Aires, Argentina.

DQIAyQF, INQUIMAE-CONICET, FCEN UBA, Ciudad Universitaria, Pab. 2, CP, 1428 Buenos Aires, Argentina.

出版信息

J Inorg Biochem. 2016 Sep;162:102-108. doi: 10.1016/j.jinorgbio.2016.06.016. Epub 2016 Jun 15.

Abstract

Nitroxyl (HNO) is a species that has been proposed recently to play different roles in nitrosative stress processes. HNO decomposition in aqueous solution leading to NO is a fast reaction that competes with many biochemical reactions in which HNO may be involved. Since molecular determinants of this reaction are still not fully understood, we present in this work an exhaustive analysis of the mechanism in terms of electronic-structure calculations as well as state of the art hybrid quantum mechanics/molecular mechanics molecular dynamics simulations. We characterized the reaction mechanism and computed free energy profiles for the reaction steps using an umbrella sampling procedure. We propose a first dimerization step followed by an acid-base equilibria. Afterwards, the product is formed from two main pathways involving cis-hyponitrous acid (cis-HONNOH) and its conjugate basis as intermediate. Our calculations show preference for the anionic pathway under physiological conditions and allow us to rationalize the results in terms of a molecular description of specific interactions with the solvent. These interactions turn out to be determinant in the stabilization of transition states and, thereby, modifying the free energy barriers. We predict a strong pH-dependence of the overall kinetics of NO formation, related with the fraction of reactive species available in solution. Finally, we suggest experimental procedures which could validate this mechanism.

摘要

硝酰基(HNO)是最近被提出在亚硝化应激过程中发挥不同作用的一种物质。HNO在水溶液中分解生成NO是一个快速反应,它与许多可能涉及HNO的生化反应相互竞争。由于该反应的分子决定性因素仍未完全理解,我们在这项工作中通过电子结构计算以及最先进的混合量子力学/分子力学分子动力学模拟对其机理进行了详尽分析。我们使用伞形抽样程序表征了反应机理并计算了反应步骤的自由能分布。我们提出了第一步二聚化,随后是酸碱平衡。之后,产物由涉及顺式亚硝酸(cis-HONNOH)及其共轭碱作为中间体的两条主要途径形成。我们的计算表明在生理条件下对阴离子途径具有偏好性,并使我们能够根据与溶剂的特定相互作用的分子描述来合理化结果。这些相互作用在过渡态的稳定中起决定性作用,从而改变自由能垒。我们预测NO形成的整体动力学对pH有强烈依赖性,这与溶液中可用的反应性物种的比例有关。最后,我们提出了可以验证该机理的实验程序。

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