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新型基于杂富勒烯的仿生α-碳酸酐酶类似物的计算设计

Computational Design of New Heterofullerene-Based Biomimetic α-Carbonic Anhydrase Analogues.

作者信息

Verma Manju, Deshpande Parag A

机构信息

Quantum and Molecular Engineering Laboratory, Department of Chemical Engineering, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India), Tel: (+91) 3222-283916.

出版信息

Chemphyschem. 2016 Oct 5;17(19):3120-3128. doi: 10.1002/cphc.201600649. Epub 2016 Aug 17.

DOI:10.1002/cphc.201600649
PMID:27442265
Abstract

The biomimetic CO hydration activity of Ru/Rh-doped fullerenes was revealed by using density functional theory calculations. The mechanism of CO hydration on the proposed heterofullerenes followed the mechanistic action of α-carbonic anhydrases, and consisted of the adsorption and deprotonation of H O, CO interaction with hydroxyl groups, CO bending, and proton transfer to give the HCO-3 product. Free-energy landscapes for the reaction showed the catalysts to be active for the reaction. H O adsorption over the catalysts was exergonic whereas CO adsorption over the catalyst-OH complex was observed to be an endergonic process. Intramolecular proton transfer resulting in the final product, HCO-3 , was found to be the rate-limiting step for the reaction on C N M (M=Ru/Rh), whereas H O dissociation was found to be the rate-limiting step for the reaction on C M (M=Ru/Rh). C N M catalysts were found to be superior to C M catalysts for biomimetic CO hydration, as indicated by the free-energy landscapes and energy requirements.

摘要

通过密度泛函理论计算揭示了钌/铑掺杂富勒烯的仿生一氧化碳水合活性。所提出的杂富勒烯上一氧化碳水合的机理遵循α-碳酸酐酶的作用机制,包括水的吸附和去质子化、一氧化碳与羟基的相互作用、一氧化碳弯曲以及质子转移以生成碳酸氢根产物。反应的自由能曲线表明催化剂对该反应具有活性。水在催化剂上的吸附是放能的,而一氧化碳在催化剂-羟基络合物上的吸附是吸能过程。导致最终产物碳酸氢根的分子内质子转移被发现是在CₙM(M = Ru/Rh)上反应的速率限制步骤,而水的解离被发现是在Cₘ(M = Ru/Rh)上反应的速率限制步骤。自由能曲线和能量需求表明,在仿生一氧化碳水合方面,CₙM催化剂优于Cₘ催化剂。

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