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31734例携带HBB基因突变的β地中海贫血:常见突变的致病性和结构分析;伊朗作为中东的十字路口

Beta thalassemia in 31,734 cases with HBB gene mutations: Pathogenic and structural analysis of the common mutations; Iran as the crossroads of the Middle East.

作者信息

Mahdieh Nejat, Rabbani Bahareh

机构信息

Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Sciences, Tehran, Iran.

Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Sciences, Tehran, Iran; Growth and Development Research Center, Tehran University of Medical Sciences, Tehran, Iran.

出版信息

Blood Rev. 2016 Nov;30(6):493-508. doi: 10.1016/j.blre.2016.07.001. Epub 2016 Jul 15.

Abstract

Thalassemia is one of the most common single gene disorders worldwide. Nearly 80 to 90 million with minor beta thalassemia and 60-70 thousand affected infants are born annually worldwide. A comprehensive search on several databases including PubMed, InterScience, British Library Direct, and Science Direct was performed extracting papers about mutation detection and frequency of beta thalassemia. All papers reporting on the mutation frequency of beta thalassemia patients were selected to analyze the frequency of mutations in different regions and various ethnicities. Mutations of 31,734 individuals were identified. Twenty common mutations were selected for further analysis. Genotype-phenotype correlation, interactome, and in silico analyses of the mutations were performed using available bioinformatics tools. Secondary structure prediction was achieved for two common mutations with online tools. The mutations were also common among the countries neighboring Iran, which are responsible for 71% to 98% of mutations. Computational analyses could be used in addition to segregation and expression analysis to assess the extent of pathogenicity of the variant. The genetics of beta thalassemia in Iran is more extensively heterogeneous than in neighboring countries. Some common mutations have arisen historically from Iran and moved to other populations due to population migrations. Also, due to genetic drift, the frequencies of some mutations have increased in small populations.

摘要

地中海贫血是全球最常见的单基因疾病之一。全球每年有近8000万至9000万轻型β地中海贫血患者以及6万至7万名患病婴儿出生。我们对包括PubMed、InterScience、大英图书馆Direct和Science Direct在内的多个数据库进行了全面检索,提取了有关β地中海贫血突变检测和频率的论文。所有报告β地中海贫血患者突变频率的论文都被选来分析不同地区和不同种族的突变频率。共鉴定出31734人的突变。选择了20种常见突变进行进一步分析。使用现有的生物信息学工具对突变进行基因型-表型相关性、相互作用组和计算机分析。利用在线工具对两种常见突变进行了二级结构预测。这些突变在伊朗的邻国中也很常见,这些邻国的突变占71%至98%。除了分离和表达分析外,还可以使用计算机分析来评估变异的致病程度。伊朗β地中海贫血的遗传学比邻国更加广泛地具有异质性。一些常见突变历史上起源于伊朗,由于人口迁移而转移到其他人群中。此外,由于遗传漂变,一些突变的频率在小群体中有所增加。

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