DNA编码化学文库：先导化合物发现的基础与应用
DNA-encoded chemical libraries: foundations and applications in lead discovery.
作者信息
Zimmermann Gunther, Neri Dario
机构信息
Department of Chemistry and Applied Biosciences, Swiss Federal Institute of Technology (ETH Zürich), Vladimir Prelog Weg 1-5/10, CH-8093 Zürich, Switzerland.
Department of Chemistry and Applied Biosciences, Swiss Federal Institute of Technology (ETH Zürich), Vladimir Prelog Weg 1-5/10, CH-8093 Zürich, Switzerland.
出版信息
Drug Discov Today. 2016 Nov;21(11):1828-1834. doi: 10.1016/j.drudis.2016.07.013. Epub 2016 Jul 28.
Abstract
DNA-encoded chemical libraries have emerged as a powerful tool for hit identification in the pharmaceutical industry and in academia. Similar to biological display techniques (such as phage display technology), DNA-encoded chemical libraries contain a link between the displayed chemical building block and an amplifiable genetic barcode on DNA. Using routine procedures, libraries containing millions to billions of compounds can be easily produced within a few weeks. The resulting compound libraries are screened in a single test tube against proteins of pharmaceutical interest and hits can be identified by PCR amplification of DNA barcodes and subsequent high-throughput sequencing.
摘要
DNA编码化学文库已成为制药行业和学术界用于发现活性分子的强大工具。与生物展示技术（如噬菌体展示技术）类似，DNA编码化学文库在展示的化学结构单元与DNA上可扩增的遗传条形码之间存在联系。通过常规程序，可在几周内轻松制备包含数百万至数十亿种化合物的文库。所得化合物文库在单个试管中针对具有药学意义的蛋白质进行筛选，通过对DNA条形码进行PCR扩增及随后的高通量测序来鉴定活性分子。
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本文引用的文献
1
DNA display of fragment pairs as a tool for the discovery of novel biologically active small molecules.片段对的DNA展示作为发现新型生物活性小分子的工具。
Chem Sci. 2015 Jan 1;6(1):739-744. doi: 10.1039/c4sc01654h. Epub 2014 Sep 22.
2
Automated screening for small organic ligands using DNA-encoded chemical libraries.使用DNA编码化学文库对小分子有机配体进行自动化筛选。
Nat Protoc. 2016 Apr;11(4):764-80. doi: 10.1038/nprot.2016.039. Epub 2016 Mar 17.
3
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J Med Chem. 2016 Jul 28;59(14):6629-44. doi: 10.1021/acs.jmedchem.5b01874. Epub 2016 Feb 25.
4
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J Med Chem. 2016 Mar 10;59(5):2163-78. doi: 10.1021/acs.jmedchem.5b01898. Epub 2016 Feb 23.
5
Novel PTP1B inhibitors identified by DNA display of fragment pairs.通过片段对的DNA展示鉴定出的新型蛋白酪氨酸磷酸酶1B抑制剂。
Bioorg Med Chem Lett. 2016 Feb 1;26(3):1080-1085. doi: 10.1016/j.bmcl.2015.11.102. Epub 2015 Nov 28.
6
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9
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