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从印度硫磺泉中分离出的印度古尔本科尼亚菌HT27T菌株(DSM 17901T)的基因组序列草图

Draft Genome Sequence of Gulbenkiania indica Strain HT27T (DSM 17901T) Isolated from a Sulfur Spring in India.

作者信息

Badhai Jhasketan, Narayan Kunwar Digvijay, Whitman William B, Das Subrata K

机构信息

Department of Biotechnology, Institute of Life Sciences, Nalco Square, Bhubaneswar, India.

Department of Microbiology, University of Georgia, Athens, Georgia, USA.

出版信息

Genome Announc. 2016 Aug 11;4(4):e00830-16. doi: 10.1128/genomeA.00830-16.

Abstract

Gulbenkiania indica strain HT27(T) was isolated from a sulfur spring. Here, we report the first representative draft genome sequence of a type strain of the genus Gulbenkiania The estimated genome is 2.8 Mb, with 2,713 protein-coding sequences.

摘要

印度古尔班基尼亚菌HT27(T)菌株是从一个硫泉中分离出来的。在此,我们报告了古尔班基尼亚菌属模式菌株的首个代表性基因组草图序列。估计基因组大小为2.8 Mb,含有2713个蛋白质编码序列。

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本文引用的文献

1
The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes.
Stand Genomic Sci. 2009 Jul 20;1(1):63-7. doi: 10.4056/sigs.632.
2
High-quality draft assemblies of mammalian genomes from massively parallel sequence data.
Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1513-8. doi: 10.1073/pnas.1017351108. Epub 2010 Dec 27.
3
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.
Nat Methods. 2010 Jun;7(6):455-7. doi: 10.1038/nmeth.1457. Epub 2010 May 2.
4
Prodigal: prokaryotic gene recognition and translation initiation site identification.
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
5
Gulbenkiania indica sp. nov., isolated from a sulfur spring.
Int J Syst Evol Microbiol. 2010 May;60(Pt 5):1052-1055. doi: 10.1099/ijs.0.014035-0. Epub 2009 Aug 7.
6
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
7
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.
Nucleic Acids Res. 2007;35(21):7188-96. doi: 10.1093/nar/gkm864. Epub 2007 Oct 18.
8
Solexa Ltd.
Pharmacogenomics. 2004 Jun;5(4):433-8. doi: 10.1517/14622416.5.4.433.
9
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.

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