Suppr超能文献

用于具有挑战性的同位素分析的社区软件:“Easotope”在团簇同位素分析中的首次应用。

Community software for challenging isotope analysis: First applications of 'Easotope' to clumped isotopes.

作者信息

John Cédric M, Bowen Devon

机构信息

Imperial College London, Earth Science and Engineering, Prince Consort Road, London, SW7 2AZ, UK.

Ziggurat GmbH, Stäfa, CH-8712, Switzerland.

出版信息

Rapid Commun Mass Spectrom. 2016 Nov 15;30(21):2285-2300. doi: 10.1002/rcm.7720.

Abstract

RATIONALE

The measurement of complex isotope systems, notably the multiply substituted isotopologues of CO derived from carbonates, is challenging from a mass spectrometric point of view, but it is also time consuming and difficult from a data reduction and normalization perspective. Dedicated software often lags behind and currently limits fast, reliable and reproducible data analysis and inter-laboratory reproducibility.

METHODS

We have developed new community software 'Easotope' using Java and the Eclipse framework. The objectives were to reduce and normalize complex isotopic data easily using a program that could run on multiple platforms, with a central database to store data and constants, an open architecture giving end users a complete view of the data processing steps, and a permissions system allowing the administrator to empower each user in proportion to their expertise.

RESULTS

Easotope is now freely available to download, and comprises both a server and a client executable. The server can be run either on a remote machine accessible via the internet, or on a localhost. The client allows users to access the server, and to enter and manipulate data. Easotope currently supports full data storage, data processing and data normalization for bulk isotopes of carbon and oxygen, and for clumped isotopes.

CONCLUSIONS

Easotope greatly simplifies data processing, reducing processing time to less than a second compared with 30 min when done manually. The software also ensures consistency in data reduction and normalization both within a laboratory and between laboratories. Easotope is designed with the ability to implement other isotopic systems in the future. Copyright © 2016 John Wiley & Sons, Ltd.

摘要

原理

从质谱分析的角度来看,测量复杂的同位素系统,特别是源自碳酸盐的一氧化碳多重取代同位素类似物具有挑战性,但从数据处理和归一化的角度来看,这也很耗时且困难。专用软件往往滞后,目前限制了快速、可靠和可重复的数据分析以及实验室间的再现性。

方法

我们使用Java和Eclipse框架开发了新的社区软件“Easotope”。目标是使用一个可以在多个平台上运行的程序轻松处理和归一化复杂的同位素数据,该程序具有一个用于存储数据和常数的中央数据库、一个开放架构,能让最终用户全面了解数据处理步骤,以及一个权限系统,允许管理员根据每个用户的专业知识赋予其相应权限。

结果

Easotope现在可免费下载,包括一个服务器和一个客户端可执行文件。服务器可以在通过互联网访问的远程机器上运行,也可以在本地主机上运行。客户端允许用户访问服务器,并输入和处理数据。Easotope目前支持碳和氧的大量同位素以及聚集同位素的完整数据存储、数据处理和数据归一化。

结论

Easotope极大地简化了数据处理,将处理时间从手动操作时的30分钟减少到不到一秒。该软件还确保了实验室内部和实验室之间数据处理和归一化的一致性。Easotope设计为未来能够实现其他同位素系统。版权所有© 2016 John Wiley & Sons, Ltd.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验