芋凝集素的高分辨率晶体结构。

High-resolution crystal structures of Colocasia esculenta tarin lectin.

作者信息

Pereira Patricia R, Meagher Jennifer L, Winter Harry C, Goldstein Irwin J, Paschoalin Vânia M F, Silva Joab T, Stuckey Jeanne A

机构信息

Centro de Tecnologia, Universidade Federal do Rio de Janeiro (UFRJ), Avenida Athos da Silveira Ramos, 149., Rio de Janeiro 21941-909, Brazil.

Department of Biological Chemistry, University of Michigan, 1150 W. Medical Center Drive, Ann Arbor, MI 48109, USA.

出版信息

Glycobiology. 2017 Jan;27(1):50-56. doi: 10.1093/glycob/cww083. Epub 2016 Aug 24.

Abstract

Tarin, the Colocasia esculenta lectin from the superfamily of α-d-mannose-specific plant bulb lectins, is a tetramer of 47 kDa composed of two heterodimers. Each heterodimer possesses homologous monomers of ~11.9 (A chain) and ~12.7 (B chain) kDa. The structures of apo and carbohydrate-bound tarin were solved to 1.7 Å and 1.91 Å, respectively. Each tarin monomer forms a canonical β-prism II fold, common to all members of Galanthus nivalis agglutinin (GNA) family, which is partially stabilized by a disulfide bond and a conserved hydrophobic core. The heterodimer is formed through domain swapping involving the C-terminal β-strand and the β-sheet on face I of the prism. The tetramer is assembled through the dimerization of the B chains from heterodimers involving face II of each prism. The 1.91 Å crystal structure of tarin bound to Manα(1,3)Manα(1,6)Man reveals an expanded carbohydrate-binding sequence (QxDxNxVxYxWX) on face III of the β-prism. Both monomers possess a similar fold, except for the length of the loop, which begins after the conserved tyrosine and creates the binding pocket for the α(1,6)-terminal mannose. This loop differs in size and amino-acid composition from 10 other β-prism II domain proteins, and may confer carbohydrate-binding specificity among members of the GNA-related lectin family.

摘要

芋凝集素(Tarin)是α-d-甘露糖特异性植物球茎凝集素超家族中的一种,由两个异源二聚体组成,是一种47 kDa的四聚体。每个异源二聚体拥有约11.9 kDa(A链)和约12.7 kDa(B链)的同源单体。脱辅基芋凝集素和与碳水化合物结合的芋凝集素的结构分别解析到1.7 Å和1.91 Å。每个芋凝集素单体形成一个典型的β-棱柱II折叠,这是雪花莲凝集素(GNA)家族所有成员共有的,部分通过二硫键和保守的疏水核心得以稳定。异源二聚体通过涉及C端β链和棱柱I面β片层的结构域交换形成。四聚体通过异源二聚体B链的二聚化组装而成,涉及每个棱柱的II面。与Manα(1,3)Manα(1,6)Man结合的芋凝集素的1.91 Å晶体结构揭示了β-棱柱III面上一个扩展的碳水化合物结合序列(QxDxNxVxYxWX)。除了环的长度不同外,两个单体具有相似的折叠结构,该环在保守酪氨酸之后开始,为α(1,6)-末端甘露糖创造了结合口袋。这个环在大小和氨基酸组成上与其他10种β-棱柱II结构域蛋白不同,可能赋予了GNA相关凝集素家族成员之间的碳水化合物结合特异性。

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