从胡安德富卡海岭热液喷口分离出的嗜碲假交替单胞菌DSM 16098和螺旋假交替单胞菌DSM 16099的基因组序列草图
Draft Genome Sequences of Pseudoalteromonas telluritireducens DSM 16098 and P. spiralis DSM 16099 Isolated from the Hydrothermal Vents of the Juan de Fuca Ridge.
作者信息
Zhang Huan, Liu Rui, Wang Mengqiang, Wang Hao, Gao Qiang, Hou Zhanhui, Zhou Zhi, Gao Dahai, Wang Lingling
机构信息
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.
出版信息
Genome Announc. 2016 Aug 25;4(4):e00871-16. doi: 10.1128/genomeA.00871-16.
Abstract
This report describes the draft genome sequences of two strains, Pseudoalteromonas telluritireducens DSM 16098 and P. spiralis DSM 16099, which were isolated from hydrothermal vents of the Juan de Fuca Ridge. The reads generated by an Ion Torrent PGM were assembled into contigs with total sizes of 4.4 Mb and 4.1 Mb for DSM 16098 and DSM 16099, respectively.
摘要
本报告描述了从胡安德富卡海岭热液喷口分离出的两株菌株——碲还原假交替单胞菌DSM 16098和螺旋假交替单胞菌DSM 16099的基因组序列草图。由Ion Torrent PGM产生的读数分别组装成重叠群，DSM 16098和DSM 16099的重叠群总大小分别为4.4 Mb和4.1 Mb。
相似文献
1
Draft Genome Sequences of Pseudoalteromonas telluritireducens DSM 16098 and P. spiralis DSM 16099 Isolated from the Hydrothermal Vents of the Juan de Fuca Ridge.从胡安德富卡海岭热液喷口分离出的嗜碲假交替单胞菌DSM 16098和螺旋假交替单胞菌DSM 16099的基因组序列草图
Genome Announc. 2016 Aug 25;4(4):e00871-16. doi: 10.1128/genomeA.00871-16.
2
Metalloid reducing bacteria isolated from deep ocean hydrothermal vents of the Juan de Fuca Ridge, Pseudoalteromonas telluritireducens sp. nov. and Pseudoalteromonas spiralis sp. nov.从胡安德富卡海岭深海热液喷口分离出的准金属还原细菌，新种碲还原假交替单胞菌和新种螺旋假交替单胞菌
Curr Microbiol. 2006 Nov;53(5):449-56. doi: 10.1007/s00284-006-0320-2. Epub 2006 Oct 19.
3
Vacuolate-attached filaments: highly productive epibionts at the Juan de Fuca hydrothermal vents.空泡附着丝状体：胡安德富卡热液喷口处高产的体表共生生物。
Mar Biol. 2010;157(4):791-800. doi: 10.1007/s00227-009-1362-3. Epub 2009 Dec 17.
4
Draft Genome Sequence of Desulfurobacterium thermolithotrophum Strain HR11, a Novel Thermophilic Autotrophic Subspecies from a Deep-Sea Hydrothermal Vent.嗜热硫化还原菌HR11菌株的基因组序列草图，HR11是一种来自深海热液喷口的新型嗜热自养亚种。
Microbiol Resour Announc. 2020 Mar 26;9(13):e00167-20. doi: 10.1128/MRA.00167-20.
5
Isolation of tellurite- and selenite-resistant bacteria from hydrothermal vents of the Juan de Fuca Ridge in the Pacific Ocean.从太平洋胡安·德富卡海岭热液喷口中分离抗亚碲酸盐和亚硒酸盐细菌。
Appl Environ Microbiol. 2002 Sep;68(9):4613-22. doi: 10.1128/AEM.68.9.4613-4622.2002.
6
Earthquake-induced changes in a hydrothermal system on the Juan de Fuca mid-ocean ridge.胡安·德富卡洋中脊热液系统的地震诱发变化。
Nature. 2000 Sep 14;407(6801):174-7. doi: 10.1038/35025040.
7
Draft-genome sequence data and phylogenomic comparison of two marine-sourced bacterial strains . MIP2626 and . BI730.两种海洋来源细菌菌株MIP2626和BI730的基因组草图序列数据及系统基因组比较
Data Brief. 2020 Jun 25;31:105898. doi: 10.1016/j.dib.2020.105898. eCollection 2020 Aug.
8
Draft Genome Sequence for the Type Strain Vulcanibacillus modesticaldus BR, a Strictly Anaerobic, Moderately Thermophilic, and Nitrate-Reducing Bacterium Isolated from Deep-Sea Hydrothermal Vents of the Mid-Atlantic Ridge.来自大西洋中脊深海热液喷口的严格厌氧、中度嗜热且能还原硝酸盐的细菌——适度嗜热火山芽孢杆菌BR模式菌株的基因组序列草图
Genome Announc. 2016 Nov 10;4(6):e01246-16. doi: 10.1128/genomeA.01246-16.
9
Effects of hydrostatic pressure on growth of hyperthermophilic archaebacteria from the juan de fuca ridge.静水压对 Juan de Fuca 脊超嗜热古菌生长的影响。
Appl Environ Microbiol. 1991 Apr;57(4):1271-4. doi: 10.1128/aem.57.4.1271-1274.1991.
10
Draft Genome Sequence of Alcanivorax sp. Strain KX64203 Isolated from Deep-Sea Sediments of Iheya North, Okinawa Trough.从冲绳海槽伊平屋北深海沉积物中分离出的食烷菌属菌株KX64203的基因组草图序列
Genome Announc. 2016 Aug 25;4(4):e00872-16. doi: 10.1128/genomeA.00872-16.
本文引用的文献
1
Complete genome sequence of Pseudoalteromonas rubra SCSIO 6842, harboring a putative conjugative plasmid pMBL6842.具有假定接合质粒pMBL6842的红色假交替单胞菌SCSIO 6842的全基因组序列。
J Biotechnol. 2016 Apr 20;224:66-7. doi: 10.1016/j.jbiotec.2016.03.010. Epub 2016 Mar 9.
2
Complete genome of Pseudoalteromonas phenolica KCTC 12086(T) (= O-BC30(T)), a marine bacterium producing polybrominated aromatic compounds.产多溴代芳香化合物的海洋细菌——酚假交替单胞菌KCTC 12086(T)（= O-BC30(T)）的全基因组
J Biotechnol. 2016 Jan 20;218:23-4. doi: 10.1016/j.jbiotec.2015.11.028. Epub 2015 Dec 2.
3
Genome sequences of two pseudoalteromonas strains isolated from the South china sea.从中国南海分离出的两株假交替单胞菌菌株的基因组序列。
Genome Announc. 2014 Apr 17;2(2):e00305-14. doi: 10.1128/genomeA.00305-14.
4
Complete genome sequence of marine bacterium Pseudoalteromonas phenolica bacteriophage TW1.海洋细菌黄杆菌噬菌体 TW1 的全基因组序列
Arch Virol. 2014 Jan;159(1):159-62. doi: 10.1007/s00705-013-1776-6. Epub 2013 Jul 13.
5
CISA: contig integrator for sequence assembly of bacterial genomes.CISA：用于细菌基因组序列组装的 contig 整合器。
PLoS One. 2013;8(3):e60843. doi: 10.1371/journal.pone.0060843. Epub 2013 Mar 28.
6
Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913.比较基因组学揭示了假交替单胞菌 sp. SM9913 深海沉积物适应生活方式。
ISME J. 2011 Feb;5(2):274-84. doi: 10.1038/ismej.2010.103. Epub 2010 Aug 12.
7
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
8
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
9
Isolation of tellurite- and selenite-resistant bacteria from hydrothermal vents of the Juan de Fuca Ridge in the Pacific Ocean.从太平洋胡安·德富卡海岭热液喷口中分离抗亚碲酸盐和亚硒酸盐细菌。
Appl Environ Microbiol. 2002 Sep;68(9):4613-22. doi: 10.1128/AEM.68.9.4613-4622.2002.
10
Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents.海洋假交替单胞菌属与高等生物有关，并产生具有生物活性的细胞外因子。
FEMS Microbiol Ecol. 1999 Dec 1;30(4):285-293. doi: 10.1111/j.1574-6941.1999.tb00656.x.
Zotero 插件