National Brain Research Centre, Manesar, Haryana-122051, India.
Department of Biochemistry, University of Calcutta, Kolkata- 700019, India.
Sci Rep. 2016 Sep 1;6:32593. doi: 10.1038/srep32593.
Network analysis through graph theory provides a quantitative approach to characterize specific proteins and their constituent assemblies that underlie host-pathogen interactions. In the present study, graph theory was used to analyze the interactome designed out of 50 differentially expressing proteins from proteomic analysis of Chandipura Virus (CHPV, Family: Rhabdoviridae) infected mouse brain tissue to identify the primary candidates for intervention. Using the measure of degree centrality, that quantifies the connectedness of a single protein within a milieu of several other interacting proteins, DJ-1 was selected for further molecular validation. To elucidate the generality of DJ-1's role in propagating infection its role was also monitored in another RNA virus, Japanese Encephalitis Virus (JEV, Family: Flaviviridae) infection. Concurrently, DJ-1 got over-expressed in response to reactive oxygen species (ROS) generation following viral infection which in the early phase of infection migrated to mitochondria to remove dysfunctional mitochondria through the process of mitophagy. DJ-1 was also observed to modulate the viral replication and interferon responses along with low-density lipoprotein (LDL) receptor expression in neurons. Collectively these evidences reveal a comprehensive role for DJ-1 in neurotropic virus infection in the brain.
通过图论进行网络分析,为描述宿主-病原体相互作用的特定蛋白质及其组成提供了一种定量方法。在本研究中,利用图论分析了从 Chandipura 病毒(CHPV,Rhabdoviridae 科)感染鼠脑组织的蛋白质组学分析中差异表达的 50 种蛋白质设计出的互作组,以鉴定干预的主要候选物。通过使用度中心性度量(该度量可量化单个蛋白质在多个相互作用蛋白质环境中的连通性),选择 DJ-1 进行进一步的分子验证。为了阐明 DJ-1 在传播感染中的普遍性,还在另一种 RNA 病毒——日本脑炎病毒(JEV,Flaviviridae 科)感染中监测了 DJ-1 的作用。同时,DJ-1 在病毒感染后因活性氧(ROS)的产生而过度表达,在感染的早期阶段,DJ-1 迁移到线粒体,通过自噬作用去除功能失调的线粒体。还观察到 DJ-1 可调节神经元中的病毒复制和干扰素反应以及低密度脂蛋白(LDL)受体表达。这些证据共同揭示了 DJ-1 在脑内神经嗜性病毒感染中的全面作用。