Christopher Ajay Francis, Gupta Mridula, Bansal Parveen
Division of Clinical Research, University Centre of Excellence in Research, Baba Farid University of Health Science, Faridkot 151203, Punjab, India.
Division of Clinical Research, University Centre of Excellence in Research, Baba Farid University of Health Science, Faridkot 151203, Punjab, India.
Gene. 2016 Dec 5;594(1):30-40. doi: 10.1016/j.gene.2016.08.044. Epub 2016 Aug 28.
Although significant advances have been established in molecular biology of Oral squamous cell carcinoma (OSCC), innovative strategies are still required to further understand detailed molecular mechanisms. Using bioinformatic approach, we aim to explore the potential miRNA-mRNA pairs in cancer related inflammatory response and investigate their potential roles as signature miRNA and proteins in the signaling pathway. Firstly, the differentially expressed genes of OSCC were selected which then underwent gene ontology to identify genes engaged in inflammatory response and its regulation. Validated miRNAs were retrieved and miRNAs with complete complementarily with their targets were visualized for miRNA-mRNA regulatory network. Protein-protein interactions of inflammatory and its regulatory genes were analyzed for interacting genes involved in signaling pathway. Eight universal miRNAs were obtained for inflammation and its regulation. miRNA-19a/b showed significant influence in controlling inflammatory response in OSCC. Therefore, micronome on deregulated genes in inflammation identifies miRNA-mRNA pairs which have high potential to be targeted for diagnostic and treatment applications in OSCC.
尽管口腔鳞状细胞癌(OSCC)的分子生物学已取得显著进展,但仍需要创新策略来进一步了解详细的分子机制。利用生物信息学方法,我们旨在探索癌症相关炎症反应中潜在的miRNA-mRNA对,并研究它们作为信号通路中标志性miRNA和蛋白质的潜在作用。首先,选择OSCC的差异表达基因,然后对其进行基因本体分析,以鉴定参与炎症反应及其调节的基因。检索经过验证的miRNA,并可视化与靶标完全互补的miRNA,构建miRNA-mRNA调控网络。分析炎症及其调控基因的蛋白质-蛋白质相互作用,以确定参与信号通路的相互作用基因。获得了8种参与炎症及其调节的通用miRNA。miRNA-19a/b在控制OSCC的炎症反应中显示出显著影响。因此,炎症中失调基因的微基因组确定了miRNA-mRNA对,这些对在OSCC的诊断和治疗应用中具有很高的靶向潜力。