尿路致病性大肠杆菌菌株NB8的基因组序列草图
Draft Genome Sequence of Uropathogenic Escherichia coli Strain NB8.
作者信息
Weng Xing-Bei, Mi Zu-Huang, Wang Chun-Xin, Zhu Jian-Ming
机构信息
Department of Medical Laboratory, Ningbo First Hospital, Ningbo, China
Department of Bioinformation, Wuxi Clon-Gen Technology Institute, Wuxi, China.
出版信息
Genome Announc. 2016 Sep 8;4(5):e00944-16. doi: 10.1128/genomeA.00944-16.
Abstract
Escherichia coli NB8 is a clinical pyelonephritis isolate. Here, we report the draft genome sequence of uropathogenic E. coli NB8, which contains drug resistance genes encoding resistance to beta-lactams, aminoglycosides, quinolones, macrolides, colistin, sulfonamide-trimethoprim, and tetracycline. NB8 infects the kidney and bladder, making it an important tool for studying E. coli pathogenesis.
摘要
大肠杆菌NB8是一株临床肾盂肾炎分离株。在此，我们报告尿路致病性大肠杆菌NB8的基因组草图序列，其含有编码对β-内酰胺类、氨基糖苷类、喹诺酮类、大环内酯类、黏菌素、磺胺甲恶唑-甲氧苄啶和四环素耐药的耐药基因。NB8可感染肾脏和膀胱，使其成为研究大肠杆菌致病机制的重要工具。
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本文引用的文献
1
Cumulative clinical experience from over a decade of use of levofloxacin in urinary tract infections: critical appraisal and role in therapy.
Infect Drug Resist. 2011;4:177-89. doi: 10.2147/IDR.S15610. Epub 2011 Oct 18.
2
Scaffolding pre-assembled contigs using SSPACE.
Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
3
The epidemiology of urinary tract infection.
Nat Rev Urol. 2010 Dec;7(12):653-60. doi: 10.1038/nrurol.2010.190.
4
ABySS: a parallel assembler for short read sequence data.
Genome Res. 2009 Jun;19(6):1117-23. doi: 10.1101/gr.089532.108. Epub 2009 Feb 27.
5
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
6
De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.
Genome Res. 2008 May;18(5):802-9. doi: 10.1101/gr.072033.107. Epub 2008 Mar 10.
7
Reannotation of Shewanella oneidensis genome.
OMICS. 2003 Summer;7(2):171-5. doi: 10.1089/153623103322246566.
8
Scientific and clinical challenges in the management of urinary tract infections.
Am J Med. 2002 Jul 8;113 Suppl 1A:1S-4S. doi: 10.1016/s0002-9343(02)01053-7.
9
A new DNA sequence assembly program.
Nucleic Acids Res. 1995 Dec 25;23(24):4992-9. doi: 10.1093/nar/23.24.4992.
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