Becker Noémie S, Margos Gabriele, Blum Helmut, Krebs Stefan, Graf Alexander, Lane Robert S, Castillo-Ramírez Santiago, Sing Andreas, Fingerle Volker
Faculty of Biology, Division of Evolutionary Biology, Ludwig Maximilians University of Munich, Grosshaderner Strasse 2, 82152, Planegg-Martinsried, Germany.
National Reference Centre for Borrelia at the Bavarian Health and Food Safety Authority, Veterinärstr. 2, 85764, Oberschleissheim, Germany.
BMC Genomics. 2016 Sep 15;17(1):734. doi: 10.1186/s12864-016-3016-4.
The Borrelia burgdorferi sensu lato (s.l.) species complex consists of tick-transmitted bacteria and currently comprises approximately 20 named and proposed genospecies some of which are known to cause Lyme Borreliosis. Species have been defined via genetic distances and ecological niches they occupy. Understanding the evolutionary relationship of species of the complex is fundamental to explaining patterns of speciation. This in turn forms a crucial basis to frame testable hypotheses concerning the underlying processes including host and vector adaptations.
Illumina Technology was used to obtain genome-wide sequence data for 93 strains of 14 named genospecies of the B. burgdorferi species complex and genomic data already published for 18 additional strain (including one new species) was added. Phylogenetic reconstruction based on 114 orthologous single copy genes shows that the genospecies represent clearly distinguishable taxa with recent and still ongoing speciation events apparent in Europe and Asia. The position of Borrelia species in the phylogeny is consistent with host associations constituting a major driver for speciation. Interestingly, the data also demonstrate that vector associations are an additional driver for diversification in this tick-borne species complex. This is particularly obvious in B. bavariensis, a rodent adapted species that has diverged from the bird-associated B. garinii most likely in Asia. It now consists of two populations one of which most probably invaded Europe following adaptation to a new vector (Ixodes ricinus) and currently expands its distribution range.
The results imply that genotypes/species with novel properties regarding host or vector associations have evolved recurrently during the history of the species complex and may emerge at any time. We suggest that the finding of vector associations as a driver for diversification may be a general pattern for tick-borne pathogens. The core genome analysis presented here provides an important source for investigations of the underlying mechanisms of speciation in tick-borne pathogens.
伯氏疏螺旋体狭义种(Borrelia burgdorferi sensu lato,s.l.)复合体由蜱传播的细菌组成,目前包括约20个已命名和提议的基因种,其中一些已知会引起莱姆病。物种是通过它们占据的遗传距离和生态位来定义的。了解该复合体物种的进化关系是解释物种形成模式的基础。这反过来又为构建关于包括宿主和媒介适应在内的潜在过程的可检验假设提供了关键依据。
利用Illumina技术获得了伯氏疏螺旋体物种复合体14个已命名基因种的93个菌株的全基因组序列数据,并添加了已发表的另外18个菌株(包括一个新物种)的基因组数据。基于114个直系单拷贝基因的系统发育重建表明,这些基因种代表了明显可区分的分类群,在欧洲和亚洲有明显的近期和仍在进行中的物种形成事件。伯氏疏螺旋体物种在系统发育中的位置与构成物种形成主要驱动力的宿主关联一致。有趣的是,数据还表明,媒介关联是这种蜱传播物种复合体多样化的另一个驱动力。这在巴伐利亚疏螺旋体(Borrelia bavariensis)中尤为明显,这是一种适应啮齿动物的物种,很可能在亚洲与与鸟类相关的加林疏螺旋体(Borrelia garinii)分化开来。它现在由两个种群组成,其中一个很可能在适应新媒介(蓖麻硬蜱,Ixodes ricinus)后入侵了欧洲,目前正在扩大其分布范围。
结果表明,在物种复合体的历史中,具有关于宿主或媒介关联新特性的基因型/物种反复进化,并且可能在任何时候出现。我们认为,发现媒介关联是多样化的驱动力可能是蜱传播病原体的普遍模式。这里呈现的核心基因组分析为研究蜱传播病原体物种形成的潜在机制提供了重要来源。