He Chao, Li Jing, Li Wei, Xue Yi, Fang Zeming, Fang Wei, Zhang Xuecheng, Wang Xiaotang, Xiao Yazhong
School of Life Sciences, Anhui University, Hefei, Anhui 230601, China; Anhui Provincial Engineering Technology Research Center of Microorganisms and Biocatalysis, Hefei, Anhui 230601, China.
Department of Chemistry & Biochemistry, Florida International University, Miami, FL 33199, United States.
J Struct Biol. 2016 Dec;196(3):426-436. doi: 10.1016/j.jsb.2016.09.009. Epub 2016 Sep 16.
Here we report the first crystal structure of a secretory α-glucoside hydrolase isolated from Pseudoalteromonas sp. K8, PspAG97A, which belongs to glycoside hydrolase family 97 and exhibits halophilic property. PspAG97A lacks an acidic surface, that is considered essential for protein stability at high salinity. Interestingly, PspAG97A unusually contains a chloride ion coordinated by the guanidinium group of Arg171 and the main chain amide groups of Tyr172 and Glu173 at the active site. The structures of PspAG97A complexed with acarbose and panose demonstrate that residues Glu173, Arg171 and Asn170 for subsite +1 decide the substrate specificity of the enzyme for the α-1,6-glucosidic linkage. Structural alterations observed in the R171K variant and enzyme kinetic experiments focusing on chloride assisted activation suggest that the active site chloride serves to properly orient Glu173, Arg171 and Asn170 to facilitate substrate recognition. Furthermore, the chloride assists the binding of Glu173 to the conserved calcium ion and plays an essential role in properly positioning the base catalyst Glu456. In sum, our results provide valuable insight into the structural basis of protein halophilicity.
在此,我们报道了从假交替单胞菌属K8菌株中分离出的一种分泌型α-葡萄糖苷水解酶PspAG97A的首个晶体结构,该酶属于糖苷水解酶家族97,并具有嗜盐特性。PspAG97A缺乏酸性表面,而酸性表面被认为是蛋白质在高盐度下保持稳定性所必需的。有趣的是,PspAG97A在活性位点异常地含有一个氯离子,该氯离子由Arg171的胍基以及Tyr172和Glu173的主链酰胺基团配位。PspAG97A与阿卡波糖和潘糖复合的结构表明,亚位点 +1 的Glu173、Arg171和Asn170残基决定了该酶对α-1,6-糖苷键的底物特异性。在R171K变体中观察到的结构变化以及聚焦于氯离子辅助激活的酶动力学实验表明,活性位点的氯离子有助于正确定位Glu173、Arg171和Asn170,以促进底物识别。此外,氯离子有助于Glu173与保守钙离子的结合,并在正确定位碱基催化剂Glu456方面发挥重要作用。总之,我们的结果为蛋白质嗜盐性的结构基础提供了有价值的见解。