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用于扩散分子通信系统的综合反应接收器建模:可逆结合、分子降解和有限数量的受体

Comprehensive Reactive Receiver Modeling for Diffusive Molecular Communication Systems: Reversible Binding, Molecule Degradation, and Finite Number of Receptors.

作者信息

Ahmadzadeh Arman, Arjmandi Hamidreza, Burkovski Andreas, Schober Robert

出版信息

IEEE Trans Nanobioscience. 2016 Oct;15(7):713-727. doi: 10.1109/TNB.2016.2609600. Epub 2016 Sep 14.

Abstract

This paper studies the problem of receiver modeling in molecular communication systems. We consider the diffusive molecular communication channel between a transmitter nano-machine and a receiver nano-machine in a fluid environment. The information molecules released by the transmitter nano-machine into the environment can degrade in the channel via a first-order degradation reaction and those that reach the receiver nano-machine can participate in a reversible bimolecular reaction with receiver receptor proteins. Thereby, we distinguish between two scenarios. In the first scenario, we assume that the entire surface of the receiver is covered by receptor molecules. We derive a closed-form analytical expression for the expected received signal at the receiver, i.e., the expected number of activated receptors on the surface of the receiver. Then, in the second scenario, we consider the case where the number of receptor molecules is finite and the uniformly distributed receptor molecules cover the receiver surface only partially. We show that the expected received signal for this scenario can be accurately approximated by the expected received signal for the first scenario after appropriately modifying the forward reaction rate constant. The accuracy of the derived analytical results is verified by Brownian motion particle-based simulations of the considered environment, where we also show the impact of the effect of receptor occupancy on the derived analytical results.

摘要

本文研究分子通信系统中的接收器建模问题。我们考虑在流体环境中发射器纳米机器与接收器纳米机器之间的扩散分子通信信道。发射器纳米机器释放到环境中的信息分子会在信道中通过一级降解反应而降解,那些到达接收器纳米机器的分子可以与接收器受体蛋白参与可逆的双分子反应。由此,我们区分两种情况。在第一种情况下,我们假设接收器的整个表面都被受体分子覆盖。我们推导出接收器处预期接收信号的闭式解析表达式,即接收器表面上活化受体的预期数量。然后,在第二种情况下,我们考虑受体分子数量有限且均匀分布的受体分子仅部分覆盖接收器表面的情况。我们表明,在适当修改正向反应速率常数后,这种情况下的预期接收信号可以由第一种情况下的预期接收信号准确近似。通过对所考虑环境进行基于布朗运动粒子的模拟,验证了所推导解析结果的准确性,我们还展示了受体占有率的影响对所推导解析结果的影响。

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