• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

海带转录组为科间关系及鲜为人知的节枝藻科(海带目)的修订提供了有力支持。

Kelp transcriptomes provide robust support for interfamilial relationships and revision of the little known Arthrothamnaceae (Laminariales).

作者信息

Jackson Chris, Salomaki Eric D, Lane Christopher E, Saunders Gary W

机构信息

Centre for Environmental and Molecular Algal Research, Department of Biology, University of New Brunswick, Fredericton, New Brunswick, E3B 5A3, Canada.

Department of Biological Sciences, University of Rhode Island, Kingston, Rhode Island, USA.

出版信息

J Phycol. 2017 Feb;53(1):1-6. doi: 10.1111/jpy.12465. Epub 2016 Nov 1.

DOI:10.1111/jpy.12465
PMID:27704553
Abstract

If ever there were "charismatic megaflora" of the sea, the Laminariales (kelp) would undoubtedly meet that designation. From the Northeast Pacific kelp forests to the less diverse, but nonetheless dense, kelp beds ranging from the Arctic to the cold temperate waters of the Southern Hemisphere, kelp provide habitat structure and food for a variety of productive marine systems. Consequently, kelp are well represented in the literature, however, understanding their evolution has proven challenging. We used a 152-gene phylogenomics approach to better resolve the phylogeny of the "derived" kelp families (viz., Agaraceae, Alariaceae, Laminariaceae, and Lessoniaceae). The formerly unresolved Egregia menziesii firmly joined a significantly expanded Arthrothamnaceae including Arthrothamnus, Cymathaere, Ecklonia, Macrocystis, Nereocystis, Pelagophycus, Postelsia, Pseudolessonia, Saccharina, and Streptophyllopsis, which rendered both the Laminariaceae and Lessoniaceae monogeneric. A published eight-gene alignment, the most marker-rich prior to this study, was expanded and analyzed to facilitate inclusion of Aureophycus. Although the topology was unchanged at the family level between the transcriptome data set relative to eight-gene analyses, the superior resolving power of the former was clearly established.

摘要

如果说海洋中有“魅力十足的巨型植物”,那么海带目(海带)无疑符合这一称谓。从东北太平洋的海带森林到多样性较低但同样茂密的海带床,从北极到南半球的冷温带水域,海带为各种多产的海洋生态系统提供栖息地结构和食物。因此,海带在文献中有充分的记载,然而,了解它们的进化过程已被证明具有挑战性。我们采用了一种基于152个基因的系统发育基因组学方法,以更好地解析“衍生”海带科(即,石花菜科、昆布科、海带科和裙带菜科)的系统发育。之前未解决的梅氏艾氏藻现已稳固地归入显著扩大的节枝藻科,该科包括节枝藻属、囊藻属、 Ecklonia、巨藻属、海囊藻属、囊叶藻属、 Postelsia、拟裙带菜属、海带属和拟节枝藻属,这使得海带科和裙带菜科都成为单属科。一个已发表的包含八个基因的比对序列,在本研究之前是标记最丰富的,经过扩展和分析以方便纳入奥氏藻属。尽管相对于八基因分析,转录组数据集在科级水平上的拓扑结构没有变化,但前者具有更强的解析能力这一点已得到明确证实。

相似文献

1
Kelp transcriptomes provide robust support for interfamilial relationships and revision of the little known Arthrothamnaceae (Laminariales).海带转录组为科间关系及鲜为人知的节枝藻科(海带目)的修订提供了有力支持。
J Phycol. 2017 Feb;53(1):1-6. doi: 10.1111/jpy.12465. Epub 2016 Nov 1.
2
Phylogeny of Alariaceae, Laminariaceae, and Lessoniaceae (Phaeophyceae) based on plastid-encoded RuBisCo spacer and nuclear-encoded ITS sequence comparisons.基于质体编码的核酮糖-1,5-二磷酸羧化酶间隔区和核编码的内转录间隔区序列比较的海带科、昆布科和裙带菜科(褐藻纲)系统发育研究
Mol Phylogenet Evol. 2001 Nov;21(2):231-43. doi: 10.1006/mpev.2001.1009.
3
A comprehensive kelp phylogeny sheds light on the evolution of an ecosystem.全面的海带系统发育研究揭示了生态系统的演化。
Mol Phylogenet Evol. 2019 Jul;136:138-150. doi: 10.1016/j.ympev.2019.04.012. Epub 2019 Apr 10.
4
Multigene phylogeny of the southern bull-kelp genus Durvillaea (Phaeophyceae: Fucales).南方巨藻属 Durvillaea(褐藻门:墨角藻目)的多基因系统发育。
Mol Phylogenet Evol. 2010 Dec;57(3):1301-11. doi: 10.1016/j.ympev.2010.10.011. Epub 2010 Oct 28.
5
MORPHOLOGY AND MOLECULAR PHYLOGENY OF AUREOPHYCUS ALEUTICUS GEN. ET SP. NOV. (LAMINARIALES, PHAEOPHYCEAE) FROM THE ALEUTIAN ISLANDS(1).来自阿留申群岛的阿留申金藻属新属新种(海带目,褐藻门)的形态学与分子系统发育(1)
J Phycol. 2008 Aug;44(4):1013-21. doi: 10.1111/j.1529-8817.2008.00548.x.
6
Phylogeography of a canopy-forming kelp, Eisenia bicyclis (Laminariales, Phaeophyceae), based on a genome-wide sequencing analysis.基于全基因组测序分析的一种形成冠层的海带——裙带菜(海带目,褐藻纲)的系统地理学
J Phycol. 2022 Apr;58(2):318-329. doi: 10.1111/jpy.13233. Epub 2022 Feb 3.
7
A molecular investigation of the genus Ecklonia (Phaeophyceae, Laminariales) with special focus on the Southern Hemisphere.对 Ecklonia 属(褐藻门,海带目)的分子研究,特别关注南半球。
J Phycol. 2015 Apr;51(2):236-46. doi: 10.1111/jpy.12264. Epub 2015 Jan 30.
8
Phaeoviral Infections Are Present in , and (Laminariales) and Are Influenced by Wave Exposure in Ectocarpales.藻病毒感染存在于(墨角藻目)和(网管藻目)中,并受到外生藻纲波浪暴露的影响。
Viruses. 2018 Aug 5;10(8):410. doi: 10.3390/v10080410.
9
Functional Insights into the Kelp Microbiome from Metagenome-Assembled Genomes.从宏基因组组装基因组中获得的巨藻微生物组的功能见解。
mSystems. 2022 Jun 28;7(3):e0142221. doi: 10.1128/msystems.01422-21. Epub 2022 Jun 1.
10
A phylogeographic investigation of the kelp genus Laminaria (Laminariales, Phaeophyceae), with emphasis on the South Atlantic Ocean.海带属(海带目,褐藻纲)的系统地理学研究,重点关注南大西洋。
J Phycol. 2017 Aug;53(4):778-789. doi: 10.1111/jpy.12544. Epub 2017 May 30.

引用本文的文献

1
Phylotranscriptomic and Evolutionary Analyses of the Green Algal Order Chaetophorales (Chlorophyceae, Chlorophyta).绿藻门胶毛藻目(Chlorophyceae,Chlorophyta)的系统发生转录组学和进化分析。
Genes (Basel). 2022 Aug 4;13(8):1389. doi: 10.3390/genes13081389.
2
Morphological, genotypic and metabolomic signatures confirm interfamilial hybridization between the ubiquitous kelps Macrocystis (Arthrothamnaceae) and Lessonia (Lessoniaceae).形态学、基因型和代谢组学特征证实了无处不在的巨藻属(石莼科)和 Lessonia 属(杉藻科)之间的种间杂交。
Sci Rep. 2020 May 19;10(1):8279. doi: 10.1038/s41598-020-65137-3.
3
Mycotoxins Contaminant in Kelp: A Neglected Dietary Exposure Pathway.
海带中的真菌毒素污染物:被忽视的饮食暴露途径。
Toxins (Basel). 2018 Nov 19;10(11):481. doi: 10.3390/toxins10110481.
4
Comparative biogeography: innovations and the rise to dominance of the North Pacific biota.比较生物地理学:创新与北太平洋生物群的崛起
Proc Biol Sci. 2018 Nov 14;285(1891):20182027. doi: 10.1098/rspb.2018.2027.
5
Plastid and mitochondrial genomes of Coccophora langsdorfii (Fucales, Phaeophyceae) and the utility of molecular markers.朗氏鹿角菜(墨角藻目,褐藻纲)的质体和线粒体基因组以及分子标记的实用性
PLoS One. 2017 Nov 2;12(11):e0187104. doi: 10.1371/journal.pone.0187104. eCollection 2017.