Jackson Chris, Salomaki Eric D, Lane Christopher E, Saunders Gary W
Centre for Environmental and Molecular Algal Research, Department of Biology, University of New Brunswick, Fredericton, New Brunswick, E3B 5A3, Canada.
Department of Biological Sciences, University of Rhode Island, Kingston, Rhode Island, USA.
J Phycol. 2017 Feb;53(1):1-6. doi: 10.1111/jpy.12465. Epub 2016 Nov 1.
If ever there were "charismatic megaflora" of the sea, the Laminariales (kelp) would undoubtedly meet that designation. From the Northeast Pacific kelp forests to the less diverse, but nonetheless dense, kelp beds ranging from the Arctic to the cold temperate waters of the Southern Hemisphere, kelp provide habitat structure and food for a variety of productive marine systems. Consequently, kelp are well represented in the literature, however, understanding their evolution has proven challenging. We used a 152-gene phylogenomics approach to better resolve the phylogeny of the "derived" kelp families (viz., Agaraceae, Alariaceae, Laminariaceae, and Lessoniaceae). The formerly unresolved Egregia menziesii firmly joined a significantly expanded Arthrothamnaceae including Arthrothamnus, Cymathaere, Ecklonia, Macrocystis, Nereocystis, Pelagophycus, Postelsia, Pseudolessonia, Saccharina, and Streptophyllopsis, which rendered both the Laminariaceae and Lessoniaceae monogeneric. A published eight-gene alignment, the most marker-rich prior to this study, was expanded and analyzed to facilitate inclusion of Aureophycus. Although the topology was unchanged at the family level between the transcriptome data set relative to eight-gene analyses, the superior resolving power of the former was clearly established.
如果说海洋中有“魅力十足的巨型植物”,那么海带目(海带)无疑符合这一称谓。从东北太平洋的海带森林到多样性较低但同样茂密的海带床,从北极到南半球的冷温带水域,海带为各种多产的海洋生态系统提供栖息地结构和食物。因此,海带在文献中有充分的记载,然而,了解它们的进化过程已被证明具有挑战性。我们采用了一种基于152个基因的系统发育基因组学方法,以更好地解析“衍生”海带科(即,石花菜科、昆布科、海带科和裙带菜科)的系统发育。之前未解决的梅氏艾氏藻现已稳固地归入显著扩大的节枝藻科,该科包括节枝藻属、囊藻属、 Ecklonia、巨藻属、海囊藻属、囊叶藻属、 Postelsia、拟裙带菜属、海带属和拟节枝藻属,这使得海带科和裙带菜科都成为单属科。一个已发表的包含八个基因的比对序列,在本研究之前是标记最丰富的,经过扩展和分析以方便纳入奥氏藻属。尽管相对于八基因分析,转录组数据集在科级水平上的拓扑结构没有变化,但前者具有更强的解析能力这一点已得到明确证实。