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如何转化一株顽固的芽孢杆菌菌株:从培养基到限制屏障。

How to transform a recalcitrant Paenibacillus strain: From culture medium to restriction barrier.

作者信息

Bach Evelise, de Carvalho Fernandes Gabriela, Passaglia Luciane Maria Pereira

机构信息

Laboratório de Microbiologia Agrícola, Departamento de Genética, Instituto de Biociências (IB), Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, RS, Brazil.

Laboratório de Microbiologia Agrícola, Departamento de Genética, Instituto de Biociências (IB), Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, RS, Brazil.

出版信息

J Microbiol Methods. 2016 Dec;131:135-143. doi: 10.1016/j.mimet.2016.10.012. Epub 2016 Oct 22.

Abstract

Paenibacillus riograndensis SBR5 is a plant growth-promoting bacterium isolated from the wheat rhizosphere. Its recalcitrance to genetic manipulation is a major bottleneck for molecular studies, as has been reported for other Paenibacillus environmental isolates. An efficient electroporation protocol was established by evaluating diverse parameters and optimizing the culture medium, culture growth phase, electroporation solution, recovery medium, DNA input, and electric field strength. Efficiencies of approximately 2.8×10transformantsμg of plasmid DNA were obtained. The optimized protocol was tested with other Paenibacillus species, and the relevance of bypassing the restriction DNA defense system to transform Paenibacillus was highlighted. This protocol is the tool needed to deepen molecular studies with this strain and will aid in the manipulation of other new environmental isolates that also exhibit recalcitrant transformation difficulties.

摘要

里奥格兰德类芽孢杆菌SBR5是一种从小麦根际分离出的促进植物生长的细菌。正如其他类芽孢杆菌环境分离株的报道一样,其对基因操作的顽固性是分子研究的一个主要瓶颈。通过评估各种参数并优化培养基、培养生长阶段、电穿孔溶液、复苏培养基、DNA输入量和电场强度,建立了一种高效的电穿孔方案。获得了约2.8×10个转化子/μg质粒DNA的效率。用其他类芽孢杆菌物种对优化后的方案进行了测试,并强调了绕过限制性DNA防御系统来转化类芽孢杆菌的相关性。该方案是深入研究该菌株所需的工具,将有助于操作其他同样存在顽固性转化困难的新环境分离株。

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