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北京类芽胞杆菌,一种从小麦根际土壤中分离到的固氮物种。

Paenibacillus beijingensis sp. nov., a nitrogen-fixing species isolated from wheat rhizosphere soil.

机构信息

State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing, 100193, China.

出版信息

Antonie Van Leeuwenhoek. 2013 Nov;104(5):675-83. doi: 10.1007/s10482-013-9974-5. Epub 2013 Aug 4.

Abstract

A novel nitrogen-fixing bacterium, BJ-18(T), was isolated from wheat rhizosphere soil. Strain BJ-18(T) was observed to be Gram-positive, facultatively anaerobic, motile and rod-shaped (0.4-0.9 μm × 2.0-2.9 μm). Phylogenetic analysis based on a partial nifH gene sequence and an assay for nitrogenase activity showed its nitrogen-fixing capacity. Phylogenetic analysis based on full 16S rRNA gene sequences suggested that strain BJ-18(T) is a member of the genus Paenibacillus. High similarity of 16S rRNA gene sequence was found between BJ-18(T) and Paenibacillus peoriae DSM 8320(T) (99.05 %), Paenibacillus jamilae DSM 13815(T) (98.86 %), Paenibacillus brasiliensis DSM 13188(T) (98.55 %), Paenibacillus polymyxa DSM 36(T) (98.74 %), Paenibacillus terrae DSM 15891(T) (97.99 %) and Paenibacillus kribbensis JCM 11465(T) (97.92 %), whereas the similarity was below 96.0 % between BJ-18(T) and the other Paenibacillus species. DNA-DNA relatedness between strain BJ-18(T) and P. peoriae DSM 8320(T), P. jamilae DSM 13815(T), P. brasiliensis DSM 13188(T), P. polymyxa DSM 36(T), P. kribbensis JCM 11465(T) and P. terrae DSM 15891(T) was determined to be 43.6 ± 2.7, 34.2 ± 5.3, 47.9 ± 6.6, 36.8 ± 3.5, 27.4 ± 4.3 and 23.6 ± 4.1 % respectively. The DNA G+C content of BJ-18(T) was determined to be 45.8 mol %. The major fatty acid was identified as anteiso-C15:0 (67.1 %). The polar lipids present in strain BJ-18(T) were identified as diphosphatidylglycerol, phosphatidyl methylethanolamine, phosphatidylethanolamine and phosphatidylglycerol. The phenotypic and genotypic characteristics, and DNA-DNA relatedness data, suggest that BJ-18(T) represents a novel species of the genus Paenibacillus, for which the name Paenibacillus beijingensis sp. nov. (Type strain BJ-18(T)=DSM25425(T)=CGMCC 1.12045(T)) is proposed.

摘要

一株从小麦根际土壤中分离到的固氮菌 BJ-18(T),为革兰氏阳性、兼性厌氧、能动、杆状(0.4-0.9μm×2.0-2.9μm)。基于部分 nifH 基因序列和固氮酶活性检测的系统发育分析表明,BJ-18(T)具有固氮能力。基于 16S rRNA 基因全序列的系统发育分析表明,菌株 BJ-18(T)是芽孢杆菌属的一员。BJ-18(T)与 Paenibacillus peoriae DSM 8320(T)(99.05%)、Paenibacillus jamilae DSM 13815(T)(98.86%)、Paenibacillus brasiliensis DSM 13188(T)(98.55%)、Paenibacillus polymyxa DSM 36(T)(98.74%)、Paenibacillus terrae DSM 15891(T)(97.99%)和 Paenibacillus kribbensis JCM 11465(T)(97.92%)的 16S rRNA 基因序列高度相似,而与其他 Paenibacillus 种的相似性低于 96.0%。菌株 BJ-18(T)与 P. peoriae DSM 8320(T)、P. jamilae DSM 13815(T)、P. brasiliensis DSM 13188(T)、P. polymyxa DSM 36(T)、P. kribbensis JCM 11465(T)和 P. terrae DSM 15891(T)之间的 DNA-DNA 同源性分别确定为 43.6±2.7%、34.2±5.3%、47.9±6.6%、36.8±3.5%、27.4±4.3%和 23.6±4.1%。BJ-18(T)的 DNA G+C 含量为 45.8mol%。主要脂肪酸为 anteiso-C15:0(67.1%)。菌株 BJ-18(T)中的极性脂为双磷脂酰甘油、磷脂酰甲乙醇胺、磷脂酰乙醇胺和磷脂酰甘油。表型、基因型特征和 DNA-DNA 同源性数据表明,BJ-18(T)代表芽孢杆菌属的一个新种,命名为北京芽孢杆菌(Paenibacillus beijingensis)sp. nov.(模式菌株 BJ-18(T)=DSM25425(T)=CGMCC 1.12045(T))。

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