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黏附G蛋白偶联受体的7次跨膜结构域

7TM Domain Structure of Adhesion GPCRs.

作者信息

de Graaf Chris, Nijmeijer Saskia, Wolf Steffen, Ernst Oliver P

机构信息

Department of Medicinal Chemistry, Amsterdam Institute for Molecules, Medicines and Systems, Vrije Universiteit Amsterdam, Amsterdam, 1081HV, The Netherlands.

Department of Biophysics, CAS-MPG Partner Institute for Computational Biology, Key Laboratory of Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, P.R. China.

出版信息

Handb Exp Pharmacol. 2016;234:43-66. doi: 10.1007/978-3-319-41523-9_3.

Abstract

Schematic presentation of the overall adhesion G Protein-Coupled Receptor (aGPCR) structure and functional domains, covering an extracellular N-terminal fragment (NTF), a membrane-spanning C-terminal fragment (CTF) and a GPCR proteolysis site (GPS). (Left side) aGPCR model constructed based on the seven-transmembrane (7TM) structure (blue) of secretin family glucagon receptor (GCGR) (PDB, 4L6R) [11] and the GPCR autoproteolysis inducing (GAIN) domain (magenta) structure of latrophilin 1 (PDB, 4DLQ) [9]. The β-13 strand residues are depicted in green. (Right side) The experimentally validated full-length secretin family GCGR structure combining structural and experimental information from the GCGR 7TM crystal structure (PDB, 4L6R) (blue), the GCGR extracellular domain (ECD) structure (PDB, 4ERS) (magenta) and the ECD structure of glucagon-like peptide-1 (GLP-1)-bound glucagon-like peptide-1 receptor (GLP-1R) (PDB, 3IOL) (green), complemented by site-directed mutagenesis, electron microscopy (EM), hydrogen-deuterium exchange (HDX) and cross-linking studies [11-13]) Despite the recent breakthroughs in the elucidation of the three-dimensional structures of the seven transmembrane (7TM) domain of the G protein-coupled receptor (GPCR) superfamily, a corresponding structure of a member of the adhesion GPCR (aGPCR) family has not yet been solved. In this chapter, we give an overview of the current knowledge of the 7TM domain of aGPCRs by comparative structure-based sequence similarity analyses between aGPCRs and GPCRs with known crystal structure. Of the GPCR superfamily, only the secretin family shares some sequence similarity with aGPCRs. This chapter will therefore emphasize on the comparison of these two GPCR families. Two 7TM domain structures of secretin family GPCRs are known that provide insight into the structure-function relationships of conserved sequence motifs that play important roles and are also present in most aGPCRs. This suggests that the 7TM domains of aGPCRs and secretin family GPCRs share a similar structural fold and that the conserved residues in both families may be involved in similar intermolecular interaction networks and facilitate similar conformational changes. Comparison of the residues that line the large peptide hormone binding pocket in the 7TM domain of secretin family GPCRs with corresponding residues in aGPCRs indicates that in the latter, the corresponding pocket in the 7TM domain is relatively hydrophobic and may be even larger. Improved knowledge on these conserved sequence motifs will help to understand the interactions of the aGPCR 7TM domain with ligands and gain insight into the activation mechanism of aGPCRs.

摘要

整体粘附G蛋白偶联受体(aGPCR)结构和功能域的示意图,包括细胞外N端片段(NTF)、跨膜C端片段(CTF)和GPCR蛋白酶解位点(GPS)。(左侧)基于促胰液素家族胰高血糖素受体(GCGR)(蛋白质数据库,4L6R)[11]的七跨膜(7TM)结构(蓝色)和促乳素受体1(蛋白质数据库,4DLQ)[9]的GPCR自蛋白酶解诱导(GAIN)结构域(品红色)构建的aGPCR模型。β-13链残基以绿色显示。(右侧)通过结合GCGR 7TM晶体结构(蛋白质数据库,4L6R)(蓝色)、GCGR细胞外结构域(ECD)结构(蛋白质数据库,4ERS)(品红色)和胰高血糖素样肽-1(GLP-1)结合的胰高血糖素样肽-1受体(GLP-1R)的ECD结构(蛋白质数据库,3IOL)(绿色)的结构和实验信息,并辅以定点诱变、电子显微镜(EM)、氢-氘交换(HDX)和交联研究,得到的经实验验证的全长促胰液素家族GCGR结构[11 - 13]。尽管在阐明G蛋白偶联受体(GPCR)超家族的七跨膜(7TM)结构域的三维结构方面取得了近期突破,但粘附GPCR(aGPCR)家族成员的相应结构尚未得到解析。在本章中,我们通过对aGPCR与具有已知晶体结构的GPCR进行基于结构的序列相似性比较分析,概述了aGPCRs的7TM结构域的当前知识。在GPCR超家族中,只有促胰液素家族与aGPCRs有一些序列相似性。因此,本章将重点比较这两个GPCR家族。已知促胰液素家族GPCRs的两个7TM结构域结构,它们为保守序列基序的结构-功能关系提供了见解,这些基序发挥着重要作用,并且在大多数aGPCRs中也存在。这表明aGPCRs和促胰液素家族GPCRs的7TM结构域具有相似的结构折叠,并且两个家族中的保守残基可能参与相似的分子间相互作用网络并促进相似的构象变化。将促胰液素家族GPCRs的7TM结构域中构成大肽激素结合口袋的残基与aGPCRs中的相应残基进行比较表明,在后者中,7TM结构域中的相应口袋相对疏水,甚至可能更大。对这些保守序列基序的深入了解将有助于理解aGPCR 7TM结构域与配体的相互作用,并深入了解aGPCRs的激活机制。

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