Chintalapudi Sumana R, Wang XiaoFei, Li Huiling, Lau Yin H Chan, Williams Robert W, Jablonski Monica M
Department of Ophthalmology, Hamilton Eye Institute, The University of Tennessee Health Science Center, Memphis, TN; Department of Anatomy and Neurobiology, The University of Tennessee Health Science Center, Memphis, TN.
Department of Ophthalmology, Hamilton Eye Institute, The University of Tennessee Health Science Center, Memphis, TN.
Mol Vis. 2016 Nov 10;22:1318-1331. eCollection 2016.
Photoreceptor degenerative diseases are among the leading causes of vision loss. Although the causative genetic mutations are often known, mechanisms leading to photoreceptor degeneration remain poorly defined. We have previously demonstrated that the photoreceptor membrane-associated protein XAP-1 antigen is a product of the gene. In this study, we used systems genetic methods, statistical modeling, and immunostaining to identify and analyze candidate genes that modulate Hspa5 expression in the retina.
Quantitative trait locus (QTL) mapping was used to map the genomic region that regulates in the cross between C57BL/6J X DBA/2J mice (BXD) genetic reference panel. The stepwise refinement of candidate genes was based on expression QTL mapping, gene expression correlation analyses (direct and partial), and analysis of regional sequence variants. The subcellular localization of candidate proteins and HSPA5 in mouse and human retinas was evaluated by immunohistochemistry. Differences in the localization of extracellular HSPA5 were assessed between healthy human donor and atrophic age-related macular degeneration (AMD) donor eyes.
In the eyes of healthy mice, extracellular HSPA5 was confined to the area around the cone photoreceptor outer segments. Mapping variation in mRNA expression levels in the retina revealed a statistically significant -acting expression QTL (eQTL) on Chromosome 2 (Chr 2) and a suggestive locus on Chr 15. on Chr 2 was the strongest candidate gene based on partial correlation analysis, Pearson correlation with , expression levels in the retina, a missense variant in exon 14, and its reported function in the extracellular matrix and interphotoreceptor matrix. SULF2 is localized to the rod and cone photoreceptors in both human and mouse retinas. In human retinas with no pathology, extracellular HSPA5 was localized around many cones within the macular area. In contrast, fewer HSPA5-immunopositive cones were observed in the retinas from AMD donors.
We identified as a candidate gene modulating the expression in the retina. The preferential loss of HSPA5 in the interphotoreceptor matrix around cone photoreceptors in atrophic AMD retinas opens up new avenues for exploring the changes in interphotoreceptor matrix (IPM) that are associated with macular disease.
光感受器退行性疾病是导致视力丧失的主要原因之一。尽管致病基因突变通常已知,但导致光感受器退化的机制仍不清楚。我们之前已经证明,光感受器膜相关蛋白XAP-1抗原是该基因的产物。在本研究中,我们使用系统遗传学方法、统计建模和免疫染色来鉴定和分析调节视网膜中Hspa5表达的候选基因。
利用数量性状位点(QTL)定位法在C57BL/6J×DBA/2J小鼠(BXD)遗传参考品系的杂交后代中定位调节该基因的基因组区域。候选基因的逐步细化基于表达QTL定位、基因表达相关性分析(直接和偏相关)以及区域序列变异分析。通过免疫组织化学评估候选蛋白和HSPA5在小鼠和人类视网膜中的亚细胞定位。评估健康人类供体和萎缩性年龄相关性黄斑变性(AMD)供体眼睛之间细胞外HSPA5定位的差异。
在健康小鼠的眼睛中,细胞外HSPA5局限于视锥光感受器外段周围区域。对视网膜中该基因mRNA表达水平的变异进行定位,发现2号染色体(Chr 2)上有一个具有统计学意义的顺式作用表达QTL(eQTL),15号染色体上有一个提示性位点。基于偏相关分析、与该基因的Pearson相关性、视网膜中的表达水平、外显子14中的一个错义变体及其在细胞外基质和光感受器间基质中的报道功能,Chr 2上的该基因是最强的候选基因。SULF2在人类和小鼠视网膜的视杆和视锥光感受器中均有定位。在无病变的人类视网膜中,细胞外HSPA5定位于黄斑区域内的许多视锥周围。相比之下,在AMD供体的视网膜中观察到的HSPA5免疫阳性视锥较少。
我们鉴定出该基因是调节视网膜中该基因表达的候选基因。萎缩性AMD视网膜中视锥光感受器周围光感受器间基质中HSPA5的优先丧失为探索与黄斑疾病相关的光感受器间基质(IPM)变化开辟了新途径。