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人类线粒体转录因子TFAM和TFB2M在转录起始过程中的启动子解链中协同发挥作用。

Human mitochondrial transcription factors TFAM and TFB2M work synergistically in promoter melting during transcription initiation.

作者信息

Ramachandran Aparna, Basu Urmimala, Sultana Shemaila, Nandakumar Divya, Patel Smita S

机构信息

Department of Biochemistry and Molecular Biology, Rutgers, Robert Wood Johnson Medical school, Piscataway, NJ 08854, USA.

Graduate School of Biomedical Sciences, Rutgers University, Piscataway, NJ 08854, USA.

出版信息

Nucleic Acids Res. 2017 Jan 25;45(2):861-874. doi: 10.1093/nar/gkw1157. Epub 2016 Nov 29.

Abstract

Human mitochondrial DNA is transcribed by POLRMT with the help of two initiation factors, TFAM and TFB2M. The current model postulates that the role of TFAM is to recruit POLRMT and TFB2M to melt the promoter. However, we show that TFAM has 'post-recruitment' roles in promoter melting and RNA synthesis, which were revealed by studying the pre-initiation steps of promoter binding, bending and melting, and abortive RNA synthesis. Our 2-aminopurine mapping studies show that the LSP (Light Strand Promoter) is melted from -4 to +1 in the open complex with all three proteins and from -4 to +3 with addition of ATP. Our equilibrium binding studies show that POLRMT forms stable complexes with TFB2M or TFAM on LSP with low-nanomolar K values, but these two-component complexes lack the mechanism to efficiently melt the promoter. This indicates that POLRMT needs both TFB2M and TFAM to melt the promoter. Additionally, POLRMT+TFB2M makes 2-mer abortives on LSP, but longer RNAs are observed only with TFAM. These results are explained by TFAM playing a role in promoter melting and/or stabilization of the open complex on LSP. Based on our results, we propose a refined model of transcription initiation by the human mitochondrial transcription machinery.

摘要

人类线粒体DNA由POLRMT在两种起始因子TFAM和TFB2M的帮助下进行转录。目前的模型假定TFAM的作用是招募POLRMT和TFB2M来解开启动子。然而,我们发现TFAM在启动子解开和RNA合成中具有“招募后”的作用,这是通过研究启动子结合、弯曲和解开以及流产性RNA合成的起始前步骤揭示的。我们的2-氨基嘌呤图谱研究表明,在与所有三种蛋白质形成的开放复合物中,轻链启动子(LSP)从-4到+1解开,添加ATP后从-4到+3解开。我们的平衡结合研究表明,POLRMT与TFB2M或TFAM在LSP上形成稳定复合物,其K值为低纳摩尔,但这两种组分的复合物缺乏有效解开启动子的机制。这表明POLRMT需要TFB2M和TFAM两者来解开启动子。此外,POLRMT+TFB2M在LSP上产生2聚体流产产物,但只有与TFAM一起才能观察到更长的RNA。这些结果可以解释为TFAM在启动子解开和/或LSP上开放复合物的稳定中发挥作用。基于我们的结果,我们提出了人类线粒体转录机制转录起始的优化模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b0fc/5314767/6fc3b45415f2/gkw1157fig1.jpg

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