Farnoosh Gholamreza, Khajeh Khosro, Latifi Ali Mohammad, Aghamollaei Hossein
Applied Biotechnology Research Centre, Baqiyatallah University of Medical Sciences, Tehran, Iran.
J Biosci. 2016 Dec;41(4):577-588. doi: 10.1007/s12038-016-9643-8.
The organophosphorus hydrolase (OPH) has been used to degrade organophosphorus chemicals, as one of the most frequently used decontamination methods. Under chemical and thermal denaturing conditions, the enzyme has been shown to unfold. To utilize this enzyme in various applications, the thermal stability is of importance. The engineering of de novo disulphide bridges has been explored as a means to increase the thermal stability of enzymes in the rational method of protein engineering. In this study, Disulphide by Design software, homology modelling and molecular dynamics simulations were used to select appropriate amino acid pairs for the introduction of disulphide bridge to improve protein thermostability. The thermostability of the wild-type and three selected mutant enzymes were evaluated by half-life, delta G inactivation (ΔGi) and structural studies (fluorescence and far-UV CD analysis). Data analysis showed that half-life of A204C/T234C and T128C/E153C mutants were increased up to 4 and 24 min, respectively; however, for the G74C/A78C mutant, the half-life was decreased up to 9 min. For the T128C/E124C mutant, both thermal stability and Catalytic efficiency (kcat) were also increased. The half-life and ΔGi results were correlated to the obtained information from structural studies by circular dichroism (CD) spectrometry and extrinsic fluorescence experiments; as rigidity increased in A204C/T2234C and T128C/E153C mutants, half-life and ΔGi also increased. For G74C/A78C mutant, these parameters decreased due to its higher flexibility. The results were submitted a strong evidence for the possibility to improve the thermostability of OPH enzyme by introducing a disulphide bridge after bioinformatics design, even though this design would not be always successful.
有机磷水解酶(OPH)已被用于降解有机磷化学品,这是最常用的去污方法之一。在化学和热变性条件下,该酶已被证明会展开。为了在各种应用中利用这种酶,热稳定性很重要。在合理的蛋白质工程方法中,探索了从头设计二硫键作为提高酶热稳定性的一种手段。在本研究中,使用“设计二硫键”软件、同源建模和分子动力学模拟来选择合适的氨基酸对,以引入二硫键来提高蛋白质的热稳定性。通过半衰期、失活自由能(ΔGi)和结构研究(荧光和远紫外圆二色性分析)评估野生型和三种选定突变酶的热稳定性。数据分析表明,A204C/T234C和T128C/E153C突变体的半衰期分别增加到4分钟和24分钟;然而,对于G74C/A78C突变体,半衰期减少到9分钟。对于T128C/E124C突变体,热稳定性和催化效率(kcat)也有所提高。半衰期和ΔGi结果与通过圆二色性(CD)光谱和外在荧光实验从结构研究中获得的信息相关;随着A204C/T2234C和T128C/E153C突变体刚性增加,半衰期和ΔGi也增加。对于G74C/A78C突变体,由于其更高的灵活性,这些参数降低。结果为通过生物信息学设计引入二硫键来提高OPH酶热稳定性的可能性提供了有力证据,尽管这种设计并非总是成功。