Cruz-Correa Omar Fernando, León-Cachón Rafael Baltazar Reyes, Barrera-Saldaña Hugo Alberto, Soberón Xavier
Instituto Nacional de Medicina Genómica, Periférico Sur No. 4809, Col. Arenal Tepepan, Delegación Tlalpan, México, D.F. C.P. 14610, Mexico.
Departamento de Bioquímica y Medicina Molecular, Facultad de Medicina, Universidad Autónoma de Nuevo León, Ave. Madero, Col. Mitras Centro, Monterrey, Nuevo León, C.P. 64640, Mexico.
Pharmacogenomics. 2017 Jan;18(2):121-131. doi: 10.2217/pgs-2016-0072. Epub 2016 Dec 15.
To use variants found by next-generation sequencing to predict atorvastatin plasmatic concentration profiles (AUC) in healthy volunteers.
SUBJECTS & METHODS: A total of 60 healthy Mexican volunteers were enrolled in this study. We used variants with a predicted functional effect across 20 genes involved in atorvastatin metabolism to construct a regression model using a support vector approach with a radial basis function kernel to predict AUC refining it afterwards in order to explain a greater extent of the variance.
The final support vector regression model using 60 variants (including six novel variants) explained 94.52% of the variance in atorvastatin AUC.
An integrated analysis of several genes known to intervene in the different steps of metabolism is required to predict atorvastatin's AUC.
利用下一代测序发现的变异来预测健康志愿者中阿托伐他汀的血浆浓度曲线(AUC)。
本研究共纳入60名健康的墨西哥志愿者。我们使用了参与阿托伐他汀代谢的20个基因中具有预测功能效应的变异,采用带有径向基函数核的支持向量方法构建回归模型来预测AUC,随后对其进行优化以解释更大程度的方差。
使用60个变异(包括6个新变异)的最终支持向量回归模型解释了阿托伐他汀AUC中94.52%的方差。
需要对已知参与代谢不同步骤的多个基因进行综合分析,以预测阿托伐他汀的AUC。