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映射在HepG2细胞上的蛋白质数据集以及登革热非结构1蛋白表达后差异丰富的蛋白质数据集。

Dataset of proteins mapped on HepG2 cells and those differentially abundant after expression of the dengue non-structural 1 protein.

作者信息

Rabelo Kíssila, Trugilho Monique R O, Costa Simone M, Ferreira André T S, Carvalho Paulo C, Perales Jonas, Alves Ada M B

机构信息

Laboratory of Biotechnology and Physiology of Viral Infections, Oswaldo Cruz Institute, Fiocruz, Rio de Janeiro, Brazil.

Laboratory of Toxinology, Oswaldo Cruz Institute, Fiocruz, Rio de Janeiro, Brazil.

出版信息

Data Brief. 2016 Dec 6;10:248-263. doi: 10.1016/j.dib.2016.11.083. eCollection 2017 Feb.

DOI:10.1016/j.dib.2016.11.083
PMID:27995162
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5153426/
Abstract

The data supplied in this article are related to the research article entitled "The effect of the dengue non-structural 1 protein expression over the HepG2 cell proteins in a proteomic approach" (K. Rabelo, M.R. Trugillo, S.M. Costa, B.A. Pereira, O.C. Moreira, A.T. Ferreira et al., 2016) [1]. The present article provides the inventory of peptides and proteins mapped in a hepatocyte cell line (HepG2) by mass spectrometry in the presence of the non-structural protein 1 (NS1) of Dengue 2 virus (DENV2). Cells were transfected with pcENS1 plasmid, which encodes the DENV2 NS1 protein, or the controls pcDNA3 (negative control) or pMAXGFP, encoding the green fluorescent protein (GFP), a protein unrelated to dengue. Differentially abundant protein lists were obtained by comparing cells transfected with pcENS1 and controls.

摘要

本文提供的数据与题为《蛋白质组学方法研究登革热非结构蛋白1表达对HepG2细胞蛋白质的影响》(K. 拉贝洛、M.R. 特鲁希略、S.M. 科斯塔、B.A. 佩雷拉、O.C. 莫雷拉、A.T. 费雷拉等人,2016年)[1]的研究论文相关。本文提供了在登革热2型病毒(DENV2)非结构蛋白1(NS1)存在的情况下,通过质谱法在肝细胞系(HepG2)中鉴定出的肽段和蛋白质清单。用编码DENV2 NS1蛋白的pcENS1质粒,或对照质粒pcDNA3(阴性对照)或编码绿色荧光蛋白(GFP,一种与登革热无关的蛋白)的pMAXGFP转染细胞。通过比较用pcENS1转染的细胞和对照细胞,获得了差异丰度蛋白质列表。

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本文引用的文献

1
The effect of the dengue non-structural 1 protein expression over the HepG2 cell proteins in a proteomic approach.采用蛋白质组学方法研究登革热非结构蛋白 1 对 HepG2 细胞蛋白的影响。
J Proteomics. 2017 Jan 30;152:339-354. doi: 10.1016/j.jprot.2016.11.001. Epub 2016 Nov 5.
2
PatternLab: from mass spectra to label-free differential shotgun proteomics.模式实验室:从质谱到无标记差异鸟枪法蛋白质组学
Curr Protoc Bioinformatics. 2012 Dec;Chapter 13:13.19.1-13.19.18. doi: 10.1002/0471250953.bi1319s40.
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Comet: an open-source MS/MS sequence database search tool.彗星:一个开源的 MS/MS 序列数据库搜索工具。
Proteomics. 2013 Jan;13(1):22-4. doi: 10.1002/pmic.201200439. Epub 2012 Dec 4.
4
Improving the TFold test for differential shotgun proteomics.改进用于差异 shotgun 蛋白质组学的 TFold 检验。
Bioinformatics. 2012 Jun 15;28(12):1652-4. doi: 10.1093/bioinformatics/bts247. Epub 2012 Apr 26.
5
Search engine processor: Filtering and organizing peptide spectrum matches.搜索引擎处理器:过滤和整理肽谱匹配结果。
Proteomics. 2012 Apr;12(7):944-9. doi: 10.1002/pmic.201100529.
6
Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins.无标记蛋白质组定量的改进:如何处理多个蛋白质共有的肽段。
Anal Chem. 2010 Mar 15;82(6):2272-81. doi: 10.1021/ac9023999.
7
Peptide separation with immobilized pI strips is an attractive alternative to in-gel protein digestion for proteome analysis.使用固定化等电聚焦条带进行肽段分离是蛋白质组分析中凝胶内蛋白质消化的一种有吸引力的替代方法。
Proteomics. 2008 Dec;8(23-24):4862-72. doi: 10.1002/pmic.200800351.
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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry.用于提高质谱法大规模蛋白质鉴定可信度的靶标-诱饵搜索策略。
Nat Methods. 2007 Mar;4(3):207-14. doi: 10.1038/nmeth1019.
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