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生命图谱:探索生命之树全貌。

Lifemap: Exploring the Entire Tree of Life.

作者信息

de Vienne Damien M

机构信息

Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive, UMR5558, Villeurbanne, Lyon, France.

出版信息

PLoS Biol. 2016 Dec 22;14(12):e2001624. doi: 10.1371/journal.pbio.2001624. eCollection 2016 Dec.

Abstract

The Tree of Life (ToL) is meant to be a unique representation of the evolutionary relationships between all species on earth. Huge efforts are made to assemble such a large tree, helped by the decrease of sequencing costs and improved methods to reconstruct and combine phylogenies, but no tool exists today to explore the ToL in its entirety in a satisfying manner. By combining methods used in modern cartography, such as OpenStreetMap, with a new way of representing tree-like structures, I created Lifemap, a tool allowing the exploration of a complete representation of the ToL (between 800,000 and 2.2 million species depending on the data source) in a zoomable interface. A server version of Lifemap also allows users to visualize their own trees. This should help researchers in ecology and evolutionary biology in their everyday work, but may also permit the diffusion to a broader audience of our current knowledge of the evolutionary relationships linking all organisms.

摘要

生命树(ToL)旨在独特地呈现地球上所有物种之间的进化关系。随着测序成本的降低以及用于重建和组合系统发育的方法得到改进,人们付出了巨大努力来构建这样一棵大树,但目前还没有工具能够以令人满意的方式全面探索生命树。通过将现代制图中使用的方法(如OpenStreetMap)与一种表示树状结构的新方式相结合,我创建了生命地图(Lifemap),这是一种工具,可在可缩放界面中探索生命树的完整表示(根据数据源,物种数量在80万至220万之间)。生命地图的服务器版本还允许用户可视化他们自己构建的树。这应该有助于生态和进化生物学领域的研究人员开展日常工作,也可能使我们目前关于所有生物进化关系的知识得以传播给更广泛的受众。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d2/5179005/3547e888d310/pbio.2001624.g001.jpg

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