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本文引用的文献
1
VariantBam: filtering and profiling of next-generational sequencing data using region-specific rules.
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2
BFC: correcting Illumina sequencing errors.
Bioinformatics. 2015 Sep 1;31(17):2885-7. doi: 10.1093/bioinformatics/btv290. Epub 2015 May 6.
3
Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly.
Bioinformatics. 2012 Jul 15;28(14):1838-44. doi: 10.1093/bioinformatics/bts280. Epub 2012 May 7.
4
BamTools: a C++ API and toolkit for analyzing and managing BAM files.
Bioinformatics. 2011 Jun 15;27(12):1691-2. doi: 10.1093/bioinformatics/btr174. Epub 2011 Apr 14.
5
SeqAn an efficient, generic C++ library for sequence analysis.
BMC Bioinformatics. 2008 Jan 9;9:11. doi: 10.1186/1471-2105-9-11.
6
BLAT--the BLAST-like alignment tool.
Genome Res. 2002 Apr;12(4):656-64. doi: 10.1101/gr.229202.
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