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MDANSE:分子动力学模拟的交互式分析环境。

MDANSE: An Interactive Analysis Environment for Molecular Dynamics Simulations.

作者信息

Goret G, Aoun B, Pellegrini E

机构信息

Computing for Science Group, Institut Laue-Langevin , 71 avenue des Martyrs, 38042 Grenoble, France.

出版信息

J Chem Inf Model. 2017 Jan 23;57(1):1-5. doi: 10.1021/acs.jcim.6b00571. Epub 2017 Jan 6.

Abstract

The MDANSE software-Molecular Dynamics Analysis of Neutron Scattering Experiments-is presented. It is an interactive application for postprocessing molecular dynamics (MD) simulations. Given the widespread use of MD simulations in material and biomolecular sciences to get a better insight for experimental techniques such as thermal neutron scattering (TNS), the development of MDANSE has focused on providing a user-friendly, interactive, graphical user interface for analyzing many trajectories in the same session and running several analyses simultaneously independently of the interface. This first version of MDANSE already proposes a broad range of analyses, and the application has been designed to facilitate the introduction of new analyses in the framework. All this makes MDANSE a valuable tool for extracting useful information from trajectories resulting from a wide range of MD codes.

摘要

介绍了MDANSE软件——中子散射实验的分子动力学分析。它是一个用于后处理分子动力学(MD)模拟的交互式应用程序。鉴于MD模拟在材料和生物分子科学中广泛用于更好地洞察热中子散射(TNS)等实验技术,MDANSE的开发重点在于提供一个用户友好的交互式图形用户界面,以便在同一会话中分析多个轨迹,并独立于界面同时运行多个分析。MDANSE的第一个版本已经提供了广泛的分析,并且该应用程序的设计便于在框架中引入新的分析。所有这些使得MDANSE成为从各种MD代码产生的轨迹中提取有用信息的宝贵工具。

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