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Phylogeny of the Paniceae (Poaceae: Panicoideae): integrating plastid DNA sequences and morphology into a new classification.黍族(禾本科:黍亚科)的系统发育:将质体DNA序列和形态学整合到一个新的分类系统中
Cladistics. 2012 Aug;28(4):333-356. doi: 10.1111/j.1096-0031.2011.00384.x. Epub 2012 Jan 3.
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Mol Phylogenet Evol. 2016 Jun;99:16-33. doi: 10.1016/j.ympev.2016.02.024. Epub 2016 Mar 5.
3
Madagascar's grasses and grasslands: anthropogenic or natural?马达加斯加的草本植物和草原:人为因素还是自然因素?
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Plant Cell Environ. 2016 Sep;39(9):1874-85. doi: 10.1111/pce.12665. Epub 2016 Jan 21.
5
Phylogenetic relationships of Echinolaena and Ichnanthus within Panicoideae (Poaceae) reveal two new genera of tropical grasses.黍亚科(禾本科)内的毛线稷属和沟颖草属的系统发育关系揭示了两个热带禾本科新属。
Mol Phylogenet Evol. 2015 Dec;93:212-33. doi: 10.1016/j.ympev.2015.07.015. Epub 2015 Jul 29.
6
From museums to genomics: old herbarium specimens shed light on a C3 to C4 transition.从博物馆到基因组学:古老的植物标本揭示了C3到C4的转变
J Exp Bot. 2014 Dec;65(22):6711-21. doi: 10.1093/jxb/eru395. Epub 2014 Sep 25.
7
Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar.莱克姆草族(禾本科)的系统发生基因组学和分类学研究,该族是来自马达加斯加的一个孤立的panicoid 谱系。
Ann Bot. 2013 Oct;112(6):1057-66. doi: 10.1093/aob/mct174. Epub 2013 Aug 28.
8
Genomic treasure troves: complete genome sequencing of herbarium and insect museum specimens.基因组宝库:植物标本馆和昆虫博物馆标本的全基因组测序。
PLoS One. 2013 Jul 29;8(7):e69189. doi: 10.1371/journal.pone.0069189. Print 2013.
9
FastUniq: a fast de novo duplicates removal tool for paired short reads.FastUniq:一种用于配对短读长的快速从头去重工具。
PLoS One. 2012;7(12):e52249. doi: 10.1371/journal.pone.0052249. Epub 2012 Dec 20.
10
Anatomical enablers and the evolution of C4 photosynthesis in grasses.草本植物 C4 光合作用进化的解剖学促进因素。
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缪斯组学解析了马达加斯加西北部特有的一种濒危禾本科植物谱系的系统学。

Museomics resolve the systematics of an endangered grass lineage endemic to north-western Madagascar.

作者信息

Silva Christian, Besnard Guillaume, Piot Anthony, Razanatsoa Jacqueline, Oliveira Reyjane P, Vorontsova Maria S

机构信息

Universidade Estadual de Feira de Santana, Departamento de Ciências Biológicas, Programa de Pós-graduação em Botânica, Av. Transnordestina s.n., Feira de Santana, Bahia 44036-900, Brazil

CNRS, Université de Toulouse, ENFA, UMR5174 EDB (Laboratoire Évolution & Diversité Biologique), 118 route de Narbonne, 31062 Toulouse, France.

出版信息

Ann Bot. 2017 Feb;119(3):339-351. doi: 10.1093/aob/mcw208. Epub 2016 Dec 27.

DOI:10.1093/aob/mcw208
PMID:28028020
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5314640/
Abstract

BACKGROUND AND AIMS

Recent developments in DNA sequencing, so-called next-generation sequencing (NGS) methods, can help the study of rare lineages that are known from museum specimens. Here, the taxonomy and evolution of the Malagasy grass lineage Chasechloa was investigated with the aid of NGS.

METHODS

Full chloroplast genome data and some nuclear sequences were produced by NGS from old herbarium specimens, while some selected markers were generated from recently collected Malagasy grasses. In addition, a scanning electron microscopy analysis of the upper floret and cross-sections of the rachilla appendages followed by staining with Sudan IV were performed on Chasechloa to examine the morphology of the upper floret and the presence of oils in the appendages.

KEY RESULTS

Chasechloa was recovered within tribe Paniceae, sub-tribe Boivinellinae, contrary to its previous placement as a member of the New World genus Echinolaena (tribe Paspaleae). Chasechloa originated in Madagascar between the Upper Miocene and the Pliocene. It comprises two species, one of them collected only once in 1851. The genus is restricted to north-western seasonally dry deciduous forests. The appendages at the base of the upper floret of Chasechloa have been confirmed as elaiosomes, an evolutionary adaptation for myrmecochory.

CONCLUSIONS

Chasechloa is reinstated at the generic level and a taxonomic treatment is presented, including conservation assessments of its species. Our study also highlights the power of NGS technology to analyse relictual or probably extinct groups.

摘要

背景与目的

DNA测序技术的最新进展,即所谓的新一代测序(NGS)方法,有助于对博物馆标本中已知的稀有谱系进行研究。在此,借助NGS对马达加斯加草谱系Chasechloa的分类学和进化进行了研究。

方法

通过NGS从旧标本馆标本中获取完整的叶绿体基因组数据和一些核序列,同时从最近采集的马达加斯加草中生成一些选定的标记。此外,对Chasechloa的上小花进行扫描电子显微镜分析,并对小穗轴附属物进行横切,然后用苏丹IV染色,以检查上小花的形态和附属物中油的存在情况。

主要结果

Chasechloa被归入黍族、Boivinellinae亚族,这与它之前被置于新世界属Echinolaena(黍族)中的分类不同。Chasechloa起源于上中新世和上新世之间的马达加斯加。它包括两个物种,其中一个仅在1851年被采集过一次。该属仅限于马达加斯加西北部季节性干燥的落叶林。Chasechloa上小花基部的附属物已被确认为油质体,这是一种对蚁播的进化适应。

结论

Chasechloa在属级水平上被重新确立,并给出了分类处理,包括对其物种的保护评估。我们的研究还强调了NGS技术在分析残遗或可能已灭绝类群方面的能力。