Silva Christian, Besnard Guillaume, Piot Anthony, Razanatsoa Jacqueline, Oliveira Reyjane P, Vorontsova Maria S
Universidade Estadual de Feira de Santana, Departamento de Ciências Biológicas, Programa de Pós-graduação em Botânica, Av. Transnordestina s.n., Feira de Santana, Bahia 44036-900, Brazil
CNRS, Université de Toulouse, ENFA, UMR5174 EDB (Laboratoire Évolution & Diversité Biologique), 118 route de Narbonne, 31062 Toulouse, France.
Ann Bot. 2017 Feb;119(3):339-351. doi: 10.1093/aob/mcw208. Epub 2016 Dec 27.
Recent developments in DNA sequencing, so-called next-generation sequencing (NGS) methods, can help the study of rare lineages that are known from museum specimens. Here, the taxonomy and evolution of the Malagasy grass lineage Chasechloa was investigated with the aid of NGS.
Full chloroplast genome data and some nuclear sequences were produced by NGS from old herbarium specimens, while some selected markers were generated from recently collected Malagasy grasses. In addition, a scanning electron microscopy analysis of the upper floret and cross-sections of the rachilla appendages followed by staining with Sudan IV were performed on Chasechloa to examine the morphology of the upper floret and the presence of oils in the appendages.
Chasechloa was recovered within tribe Paniceae, sub-tribe Boivinellinae, contrary to its previous placement as a member of the New World genus Echinolaena (tribe Paspaleae). Chasechloa originated in Madagascar between the Upper Miocene and the Pliocene. It comprises two species, one of them collected only once in 1851. The genus is restricted to north-western seasonally dry deciduous forests. The appendages at the base of the upper floret of Chasechloa have been confirmed as elaiosomes, an evolutionary adaptation for myrmecochory.
Chasechloa is reinstated at the generic level and a taxonomic treatment is presented, including conservation assessments of its species. Our study also highlights the power of NGS technology to analyse relictual or probably extinct groups.
DNA测序技术的最新进展,即所谓的新一代测序(NGS)方法,有助于对博物馆标本中已知的稀有谱系进行研究。在此,借助NGS对马达加斯加草谱系Chasechloa的分类学和进化进行了研究。
通过NGS从旧标本馆标本中获取完整的叶绿体基因组数据和一些核序列,同时从最近采集的马达加斯加草中生成一些选定的标记。此外,对Chasechloa的上小花进行扫描电子显微镜分析,并对小穗轴附属物进行横切,然后用苏丹IV染色,以检查上小花的形态和附属物中油的存在情况。
Chasechloa被归入黍族、Boivinellinae亚族,这与它之前被置于新世界属Echinolaena(黍族)中的分类不同。Chasechloa起源于上中新世和上新世之间的马达加斯加。它包括两个物种,其中一个仅在1851年被采集过一次。该属仅限于马达加斯加西北部季节性干燥的落叶林。Chasechloa上小花基部的附属物已被确认为油质体,这是一种对蚁播的进化适应。
Chasechloa在属级水平上被重新确立,并给出了分类处理,包括对其物种的保护评估。我们的研究还强调了NGS技术在分析残遗或可能已灭绝类群方面的能力。