合成生物学开放语言的验证器与转换器
A Validator and Converter for the Synthetic Biology Open Language.
作者信息
Zundel Zach, Samineni Meher, Zhang Zhen, Myers Chris J
机构信息
Department of Bioengineering, University of Utah , 36 S. Wasatch Drive, SMBB Room 3100, Salt Lake City, Utah 84112, United States.
Department of Electrical and Computer Engineering, University of Utah , 50 S. Central Campus Drive, MEB Room 2110, Salt Lake City, Utah 84112, United States.
出版信息
ACS Synth Biol. 2017 Jul 21;6(7):1161-1168. doi: 10.1021/acssynbio.6b00277. Epub 2017 Feb 23.
This paper presents a new validation and conversion utility for the Synthetic Biology Open Language (SBOL). This utility can be accessed directly in software using the libSBOLj library, through a web interface, or using a web service via RESTful API calls. The validator checks all required and best practice rules set forth in the SBOL specification document, and it reports back to the user the location within the document of any errors found. The converter is capable of translating from/to SBOL 1, GenBank, and FASTA formats to/from SBOL 2. The SBOL Validator/Converter utility is released freely and open source under the Apache 2.0 license. The online version of the validator/converter utility can be found here: http://www.async.ece.utah.edu/sbol-validator/ . The source code for the validator/converter can be found here: http://github.com/SynBioDex/SBOL-Validator/ .
本文介绍了一种用于合成生物学开放语言（SBOL）的新型验证和转换实用工具。该实用工具可通过使用libSBOLj库在软件中直接访问，通过网络界面访问，或通过RESTful API调用使用网络服务来访问。验证器会检查SBOL规范文档中规定的所有必需规则和最佳实践规则，并向用户报告所发现任何错误在文档中的位置。转换器能够在SBOL 1、GenBank和FASTA格式与SBOL 2格式之间进行相互转换。SBOL验证器/转换器实用工具在Apache 2.0许可下免费开源发布。验证器/转换器实用工具的在线版本可在此处找到：http://www.async.ece.utah.edu/sbol-validator/ 。验证器/转换器的源代码可在此处找到：http://github.com/SynBioDex/SBOL-Validator/ 。
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