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菌株RCAM1026 bv.的基因组草图

Draft genome of the strain RCAM1026 bv. .

作者信息

Afonin Alexey, Sulima Anton, Zhernakov Aleksandr, Zhukov Vladimir

机构信息

All-Russia Research Institute for Agricultural Microbiology (ARRIAM), Russia.

出版信息

Genom Data. 2016 Dec 14;11:85-86. doi: 10.1016/j.gdata.2016.12.003. eCollection 2017 Mar.

DOI:10.1016/j.gdata.2016.12.003
PMID:28053873
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5198633/
Abstract

bv. RCAM1026 is a strain first isolated in 1964 from nodules of "Ramensky 77" cultivar of garden pea ( L.) now routinely used as a model strain in inoculation experiments on pea. Assembly with SPAdes yielded 133 contigs longer then 200 bp (N50 = 202,321, GC% = 60.84). Resulting annotated genome is 7,248,686 bp encoding 6792 genes.

摘要

bv. RCAM1026是1964年首次从豌豆(L.)“Ramensky 77”品种的根瘤中分离出的菌株,目前在豌豆接种实验中通常用作模式菌株。使用SPAdes进行组装产生了133个长度超过200 bp的重叠群(N50 = 202,321,GC% = 60.84)。得到的注释基因组为7,248,686 bp,编码6792个基因。

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本文引用的文献

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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
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The pea Sym37 receptor kinase gene controls infection-thread initiation and nodule development.豌豆Sym37受体激酶基因控制感染丝起始和根瘤发育。
Mol Plant Microbe Interact. 2008 Dec;21(12):1600-8. doi: 10.1094/MPMI-21-12-1600.
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The genome of Rhizobium leguminosarum has recognizable core and accessory components.豌豆根瘤菌的基因组具有可识别的核心和辅助成分。
Genome Biol. 2006;7(4):R34. doi: 10.1186/gb-2006-7-4-r34. Epub 2006 Apr 26.