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淡水羽纹硅藻辐射圆筛藻中硅转运蛋白基因的独特构型。

Unique configuration of genes of silicon transporter in the freshwater pennate diatom Synedra acus subsp. radians.

作者信息

Marchenkov A M, Bondar A A, Petrova D P, Habudaev K V, Galachyants Yu P, Zakharova Yu R, Volokitina N A, Grachev M A

机构信息

Limnological Institute, Siberian Branch, Russian Academy of Sciences, ul. Ulan-Batorskaya 3, Irkutsk, 664033, Russia.

Institute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, pr. Akademika Lavrent'eva 8, Novosibirsk, 630090, Russia.

出版信息

Dokl Biochem Biophys. 2016 Nov;471(1):407-409. doi: 10.1134/S1607672916060089. Epub 2017 Jan 6.

DOI:10.1134/S1607672916060089
PMID:28058681
Abstract

The existence of the cluster of duplicated sit silicon transporter genes in the chromosome of the diatom Synedra acus subsp. radians was shown for the first time. Earlier, the localization of sit genes in the same chromosome and cluster formation caused by gene duplication was shown only for the marine raphid pennate diatom P. tricornutum. Only non-clustered sit genes were found in the genomes of other diatoms. It is reasonable to assume that sit tandem (sit-td) and sit triplet (sit-tri) genes of S. acus subsp. radians occurred as a result of gene duplication followed by divergence of gene copies.

摘要

首次发现硅藻辐射圆筛藻(Synedra acus subsp. radians)染色体中存在重复的硅转运蛋白基因簇。此前,仅在海洋针杆硅藻三角褐指藻(P. tricornutum)中发现了硅转运蛋白基因位于同一染色体上且因基因复制导致基因簇形成的情况。在其他硅藻的基因组中仅发现了非簇状的硅转运蛋白基因。合理推测,辐射圆筛藻的硅转运蛋白串联基因(sit-td)和三联基因(sit-tri)是基因复制后基因拷贝发生分化的结果。

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PLoS One. 2018 Aug 29;13(8):e0203161. doi: 10.1371/journal.pone.0203161. eCollection 2018.

本文引用的文献

1
Sequencing of the complete genome of an araphid pennate diatom Synedra acus subsp. radians from Lake Baikal.对来自贝加尔湖的一种无壳羽纹硅藻辐射圆筛藻(Synedra acus subsp. radians)的全基因组进行测序。
Dokl Biochem Biophys. 2015;461:84-8. doi: 10.1134/S1607672915020064. Epub 2015 May 5.
2
Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes.甲藻 Synedra acus 线粒体基因组的全序列及其与硅藻线粒体基因组的比较分析。
Curr Genet. 2010 Jun;56(3):215-23. doi: 10.1007/s00294-010-0293-3. Epub 2010 Mar 23.
3
Genome-wide transcriptome analyses of silicon metabolism in Phaeodactylum tricornutum reveal the multilevel regulation of silicic acid transporters.
对三角褐指藻硅代谢的全基因组转录组分析揭示了硅酸转运蛋白的多层次调控。
PLoS One. 2009 Oct 14;4(10):e7458. doi: 10.1371/journal.pone.0007458.
4
A gene family of silicon transporters.硅转运蛋白的一个基因家族。
Nature. 1997 Feb 20;385(6618):688-9. doi: 10.1038/385688b0.
5
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Mol Gen Genet. 1992 May;233(1-2):302-10. doi: 10.1007/BF00587592.