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一种生物活性4-氨基安替比林类似物的物理化学分析——合成、晶体结构、固态相互作用、抗菌、构象及对接研究

Physicochemical analyses of a bioactive 4-aminoantipyrine analogue - synthesis, crystal structure, solid state interactions, antibacterial, conformational and docking studies.

作者信息

Alam Mohammad Sayed, Lee Dong-Ung

机构信息

Division of Bioscience, Dongguk University, Gyeongju 780-714, Republic of Korea; Department of Chemistry, Jagannath University, Dhaka 1100, Bangladesh.

Division of Bioscience, Dongguk University, Gyeongju 780-714, Republic of Korea.

出版信息

EXCLI J. 2016 Oct 26;15:614-629. doi: 10.17179/excli2016-477. eCollection 2016.

Abstract

A novel Schiff base derivative of 4-aminoantipyrine, that is, ()-4-(2-methoxybenzylideneamino)-1,5-dimethyl-2-phenyl-1-pyrazol-3(2)-one (MBA-dMPP), was synthesized and characterized by FT-IR, H-NMR, and EI-MS. Single-crystal X-ray diffraction data revealed MBA-dMPP adopts a configuration around its central C=N double bond, and forms orthorhombic crystals. XRD revealed that MBA-dMPP possess two different planes, in which the pyrazolone and benzylidene groups attached to C9 of the pyrazolone ring are almost coplanar and the phenyl ring connected to the N1 atom of the pyrazolone moiety lies in another plane. The intermolecular, host-guest C-H…O, C-H…N, and C-H…C van der Waals interactions were found to form a 3D network and confer stability to the MBA-dMPP crystal structure. The quantitative and qualitative solid state behaviors of MBA-dMPP were subjected to 3D Hirshfeld surface analysis and 2D fingerprint plotting. Reciprocal H…H contacts contributed most (52.9 %) to the Hirshfeld surface, followed by C…H/H…C contacts (30.2 %), whereas, O…H/H…O and N…H/H…N interactions contributed 15.5 % to the Hirshfeld surface. Electrostatic potentials were mapped over the Hirshfeld surface to analyze electrostatic complementarities within the MBA-dMPP crystal. In addition, geometrical descriptors were also analyzed to the extent of surface interactions. MBA-dMPP was also investigated for antibacterial activity against Gram-positive and Gram-negative bacterial strains, and showed highest activity against (MIC = 12.5 μg mL) and (MIC = 50 μg mL). screening was conducted by docking MBA-dMPP on the active site of S12 bacterial protein (an important therapeutic target of antibacterial agents) and its binding properties were compared with those of ciprofloxacin. Moreover, a field points map of MBA-dMPP ligand was studied to determine electrostatic and van der Waals forces, hydrophobic potentials, and positions involved in ligand-receptor interactions. Finally, the torsion energies of crystal structure and optimized and bioactive conformers of MBA-dMPP were compared to predict its bioactive conformation.

摘要

合成了一种新型的4-氨基安替比林席夫碱衍生物,即()-4-(2-甲氧基亚苄基氨基)-1,5-二甲基-2-苯基-1-吡唑-3(2)-酮(MBA-dMPP),并通过傅里叶变换红外光谱(FT-IR)、氢核磁共振光谱(H-NMR)和电子轰击质谱(EI-MS)对其进行了表征。单晶X射线衍射数据表明,MBA-dMPP围绕其中心C=N双键采取反式构型,并形成正交晶体。X射线衍射表明,MBA-dMPP具有两个不同的平面,其中吡唑啉酮环C9上连接的吡唑啉酮基团和亚苄基基团几乎共面,与吡唑啉酮部分N1原子相连的苯环位于另一个平面。发现分子间、主客体C-H…O、C-H…N和C-H…C范德华相互作用形成三维网络,并赋予MBA-dMPP晶体结构稳定性。对MBA-dMPP的定量和定性固态行为进行了三维 Hirshfeld表面分析和二维指纹图谱绘制。相互的H…H接触对Hirshfeld表面贡献最大(52.9%),其次是C…H/H…C接触(30.2%),而O…H/H…O和N…H/H…N相互作用对Hirshfeld表面贡献15.5%。在Hirshfeld表面上绘制静电势,以分析MBA-dMPP晶体内的静电互补性。此外,还对表面相互作用程度的几何描述符进行了分析。还研究了MBA-dMPP对革兰氏阳性和革兰氏阴性细菌菌株的抗菌活性,对金黄色葡萄球菌(MIC = 12.5 μg/mL)和大肠杆菌(MIC = 50 μg/mL)显示出最高活性。通过将MBA-dMPP对接在S12细菌蛋白(抗菌剂的一个重要治疗靶点)的活性位点上进行筛选,并将其结合特性与环丙沙星进行比较。此外,研究了MBA-dMPP配体的场点图,以确定静电和范德华力、疏水势以及配体-受体相互作用所涉及的位置。最后,比较了MBA-dMPP晶体结构以及优化和生物活性构象的扭转能,以预测其生物活性构象。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05f9/5225685/d5bf3dc11898/EXCLI-15-614-t-001.jpg

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