a Department of Biophysics , Tarbiat Modares University , Tehran , Iran.
J Biomol Struct Dyn. 2018 Jan;36(1):166-176. doi: 10.1080/07391102.2016.1270855. Epub 2017 Jan 19.
One way to control hypertension is inactivation of the Renin- Angiotensin- Aldosterone System (RAAS). Inhibition of renin as a rate-limiting step of this system is an effective way to stop up RAAS. It has been proved that soyasaponin I, an herbal compound obtained from soybeans, has anti-hypertensive effect via renin inhibition, so it has the potential of being an anti-hypertensive drug. Herein, some theoretical approaches such as Docking Simulation, Molecular Dynamics (MD) Simulation and MMPBSA analysis have been used to study how soyasaponin I inhibits renin at the structural level. The results of docking simulation and hydrogen bond pattern show that this ligand is able to bind to the active site of renin and a region near the active site. Results of MD simulation for renin - soyasaponin I complexes confirm that soyasaponin I binds to the active site of renin and has inhibition effect on it via competing with the substrate. Besides, according to MMPBSA analysis, the binding free energy for renin - soyasaponin I complex is -42.61 kcal/mol when it binds to the active site. Comparing to the peptide obtained from angiotensinogen, ΔG = -74.96 kcal/mol, it may inferred that although binding of soyasaponin I to the active site of renin does not have a complete competition with the substrate, it might attenuate the formation of renin - angiotensinogen complex and have partial non-competitive effect. The results of this survey might be helpful to design partial non - competitive renin inhibitors with pharmaceutical capability.
控制高血压的一种方法是使肾素-血管紧张素-醛固酮系统(RAAS)失活。抑制作为该系统限速步骤的肾素是阻止 RAAS 的有效方法。已经证明,从大豆中获得的植物化合物大豆皂甙 I 通过抑制肾素来发挥降压作用,因此它具有成为抗高血压药物的潜力。在此,使用了一些理论方法,例如对接模拟、分子动力学(MD)模拟和 MMPBSA 分析,以研究大豆皂甙 I 如何在结构水平上抑制肾素。对接模拟和氢键模式的结果表明,该配体能够与肾素的活性位点和活性位点附近的区域结合。肾素-大豆皂甙 I 复合物的 MD 模拟结果证实,大豆皂甙 I 通过与底物竞争结合到肾素的活性位点并对其具有抑制作用。此外,根据 MMPBSA 分析,当大豆皂甙 I 与活性位点结合时,其与肾素的结合自由能为-42.61 kcal/mol。与从血管紧张素原获得的肽相比,ΔG = -74.96 kcal/mol,可以推断出,尽管大豆皂甙 I 与肾素的活性位点结合不完全与底物竞争,但它可能会减弱肾素-血管紧张素原复合物的形成并具有部分非竞争性作用。这项调查的结果可能有助于设计具有药物作用的部分非竞争性肾素抑制剂。