Bull Tim J, Munshi Tulika, Mikkelsen Heidi, Hartmann Sofie B, Sørensen Maria R, Garcia Joanna S, Lopez-Perez Paula M, Hofmann Sven, Hilpert Kai, Jungersen Gregers
Institute of Infection and Immunity, St George's University of London London, UK.
National Veterinary Institute, Technical University of Denmark (DTU) Kongens Lyngby, Denmark.
Front Microbiol. 2017 Jan 4;7:2112. doi: 10.3389/fmicb.2016.02112. eCollection 2016.
The quantitative detection of viable pathogen load is an important tool in determining the degree of infection in animals and contamination of foodstuffs. Current conventional culture methods are limited in their ability to determine these levels in subspecies (MAP) due to slow growth, clumping and low recoverability issues. The principle goal of this study was to evaluate a novel culturing process (TiKa) with unique ability to stimulate MAP growth from low sample loads and dilutions. We demonstrate it was able to stimulate a mean 29-fold increase in recoverability and an improved sensitivity of up to three logs when compared with conventional culture. Using TiKa culture, MAP clumping was minimal and produced visible colonies in half the time required by standard culture methods. Parallel quantitative evaluation of the TiKa culture approach and qPCR on MAP loads in tissue and gut mucosal samples from a MAP vaccine-challenge study, showed good correlations between colony counts (cfu) and qPCR derived genome equivalents (Geq) over a large range of loads with a 30% greater sensitivity for TiKa culture approach at low loads (two logs). Furthermore, the relative fold changes in Geq and cfu from the TiKa culture approach suggests that non-mucosal tissue loads from MAP infected animals contained a reduced proportion of non-viable MAP (mean 19-fold) which was reduced significantly further (mean 190-fold) in vaccinated "reactor" calves. This study shows TiKa culture equates well with qPCR and provides important evidence that accuracy in estimating viable MAP load using DNA tests alone may vary significantly between samples of mucosal and lymphatic origin.
对活菌病原体载量进行定量检测是确定动物感染程度和食品污染情况的一项重要工具。由于生长缓慢、聚集以及回收率低等问题,目前的传统培养方法在确定亚种(副结核分枝杆菌,MAP)中的这些水平时能力有限。本研究的主要目标是评估一种新型培养方法(TiKa),该方法具有独特能力,能够从低样本载量和稀释液中刺激MAP生长。我们证明,与传统培养方法相比,它能够使回收率平均提高29倍,并将灵敏度提高多达三个对数级。使用TiKa培养方法时,MAP聚集现象极少,并且在标准培养方法所需时间的一半内就能产生可见菌落。在一项MAP疫苗攻毒研究中,对TiKa培养方法和qPCR在组织和肠道黏膜样本中MAP载量的平行定量评估表明,在很大范围的载量内,菌落计数(cfu)与qPCR得出的基因组当量(Geq)之间具有良好的相关性,在低载量(两个对数级)时,TiKa培养方法的灵敏度高30%。此外,TiKa培养方法中Geq和cfu的相对倍数变化表明,来自MAP感染动物的非黏膜组织载量中,不可存活MAP的比例降低(平均19倍),在接种疫苗的“反应”小牛中这一比例进一步显著降低(平均190倍)。本研究表明TiKa培养方法与qPCR相当,并提供了重要证据,即仅使用DNA检测来估计存活MAP载量的准确性在黏膜和淋巴来源的样本之间可能有显著差异。