Ramos Andrea E, Muñoz Marina, Moreno-Pérez Darwin A, Patarroyo Manuel A
Molecular Biology and Immunology Department, Fundación Instituto de Inmunología de Colombia, Cra. 50 # 26-20, Bogotá, Colombia.
PhD Programme in Biomedical and Biological Sciences, Universidad del Rosario, Bogotá, Colombia.
AMB Express. 2017 Dec;7(1):26. doi: 10.1186/s13568-017-0324-2. Epub 2017 Jan 24.
DNA cloning is an essential tool regarding DNA recombinant technology as it allows the replication of foreign DNA fragments within a cell. pELMO was here constructed as an in-house cloning vector for rapid and low-cost PCR product propagation; it is an optimally designed vector containing the ccdB killer gene from the pDONR 221 plasmid, cloned into the pUC18 vector's multiple cloning site (Thermo Scientific). The ccdB killer gene has a cleavage site (CCC/GGG) for the SmaI restriction enzyme which is used for vector linearisation and cloning blunt-ended products. pELMO transformation efficiency was evaluated with different sized inserts and its cloning efficiency was compared to that of the pGEM-T Easy commercial vector. The highest pELMO transformation efficiency was observed for ~500 bp DNA fragments; pELMO vector had higher cloning efficiency for all insert sizes tested. In-house and commercial vector cloned insert reads after sequencing were similar thus highlighting that sequencing primers were designed and localised appropriately. pELMO is thus proposed as a practical alternative for in-house cloning of PCR products in molecular biology laboratories.
DNA克隆是DNA重组技术的一项重要工具,因为它能使外源DNA片段在细胞内复制。pELMO在此被构建为一种内部克隆载体,用于快速且低成本地扩增PCR产物;它是一种经过优化设计的载体,含有来自pDONR 221质粒的ccdB杀伤基因,该基因被克隆到pUC18载体的多克隆位点(赛默飞世尔科技公司)。ccdB杀伤基因具有一个用于SmaI限制酶的切割位点(CCC/GGG),该酶用于载体线性化及克隆平端产物。用不同大小的插入片段评估了pELMO的转化效率,并将其克隆效率与pGEM-T Easy商业载体的克隆效率进行了比较。对于约500 bp的DNA片段,观察到pELMO的转化效率最高;对于所有测试的插入片段大小,pELMO载体都具有更高的克隆效率。测序后,内部载体和商业载体克隆的插入片段读数相似,这突出表明测序引物的设计和定位是合适的。因此,pELMO被提议作为分子生物学实验室内部克隆PCR产物的一种实用替代方案。