Suppr超能文献

通过基质辅助激光解吸电离飞行时间质谱快速鉴定外瓶霉属临床相关成员及两种新物种坎贝尔外瓶霉和熔岩外瓶霉的描述

Rapid Identification of Clinically Relevant Members of the Genus Exophiala by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry and Description of Two Novel Species, Exophiala campbellii and Exophiala lavatrina.

作者信息

Borman Andrew M, Fraser Mark, Szekely Adrien, Larcombe Daniel E, Johnson Elizabeth M

机构信息

PHE UK National Mycology Reference Laboratory, Bristol, United Kingdom

PHE UK National Mycology Reference Laboratory, Bristol, United Kingdom.

出版信息

J Clin Microbiol. 2017 Apr;55(4):1162-1176. doi: 10.1128/JCM.02459-16. Epub 2017 Jan 25.

Abstract

is a ubiquitous pleomorphic genus comprising at least 40 species, many of which have been associated with superficial, visceral, or systemic infections in humans, other mammals, or cold-blooded animals. In this study, we investigated the potential of matrix-assisted laser desorption-ionization time of flight mass spectrometry (MALDI-TOF MS) for the identification of species. A total of 89 isolates (including 50 human and 4 animal clinical isolates) stored in the National Collection of Pathogenic Fungi were identified by PCR amplification and sequencing of internal transcribed spacer region 1. Eighty-three of the isolates corresponded to 16 known species within The remaining six isolates are shown by phylogenetic analyses based on four loci to represent two novel species. Four isolates from domestic bathrooms which form a sister species with are described here as sp. nov. The remaining two isolates, both from subcutaneous infections, are distantly related to and are described here as sp. nov. The triazoles and terbinafine exhibited low MICs against all isolates MALDI-TOF MS successfully distinguished all 18 species and identified all isolates after appropriate reference spectra were created and added to commercial databases. Intraspecific mean log scores ranged from 1.786 to 2.584 and were consistently significantly higher than interspecific scores (1.193 to 1.624), with the exception of and , for which there was considerable log score overlap. In summary, MALDI-TOF MS allows the rapid and accurate identification of a wide range of clinically relevant species.

摘要

是一个无处不在的多形属,包含至少40个物种,其中许多与人类、其他哺乳动物或冷血动物的浅表、内脏或全身感染有关。在本研究中,我们调查了基质辅助激光解吸电离飞行时间质谱(MALDI-TOF MS)用于鉴定该属物种的潜力。通过对核糖体DNA内转录间隔区1进行PCR扩增和测序,对保存在国家致病真菌保藏中心的89株分离株(包括50株人类临床分离株和4株动物临床分离株)进行了鉴定。其中83株分离株对应于该属内16个已知物种。其余6株分离株通过基于四个基因座的系统发育分析表明代表两个新的该属物种。来自家庭浴室的4株分离株与该属某一物种形成姐妹种,在此描述为新种。其余2株分离株均来自皮下感染,与该属某一物种亲缘关系较远,在此描述为新种。三唑类药物和特比萘芬对所有该属分离株均表现出低最低抑菌浓度。在创建并将适当的参考光谱添加到商业数据库后,MALDI-TOF MS成功区分了所有18个物种并鉴定了所有分离株。种内平均对数分数范围为1.786至2.584,除某两个物种外,始终显著高于种间分数(1.193至1.624),这两个物种的对数分数有相当大的重叠。总之,MALDI-TOF MS能够快速准确地鉴定多种临床相关的该属物种。

相似文献

5
MALDI-TOF MS identification of Exophiala species isolated in Japan: Library enrichment and faster sample preparation.
J Dermatol. 2023 Oct;50(10):1313-1320. doi: 10.1111/1346-8138.16878. Epub 2023 Jun 29.
6
MALDI-TOF MS-based identification of black yeasts of the genus Exophiala.
Med Mycol. 2015 May;53(4):347-52. doi: 10.1093/mmy/myu093.
10
In vitro susceptibility of environmental isolates of Exophiala dermatitidis to five antifungal drugs.
Mycopathologia. 2013 Jun;175(5-6):455-61. doi: 10.1007/s11046-012-9597-9. Epub 2012 Nov 16.

引用本文的文献

1
Bloodstream Infections in Humans-A Narrative Review.
Pathogens. 2025 Jul 17;14(7):706. doi: 10.3390/pathogens14070706.
4
pulmonary infection requiring a surgical treatment in a paediatric haematopoietic progenitor cell recipient.
Med Mycol Case Rep. 2024 Apr 4;44:100645. doi: 10.1016/j.mmcr.2024.100645. eCollection 2024 Jun.
5
7
Antifungal susceptibility profiles for fungal isolates from corneas and contact lenses in the United Kingdom.
Eye (Lond). 2024 Feb;38(3):529-536. doi: 10.1038/s41433-023-02719-1. Epub 2023 Sep 8.
8
 and (Chaetothyriales, Herpotrichiellaceae), two new species of soil-inhabiting from Yunnan Province, China.
MycoKeys. 2022 Dec 21;94:109-124. doi: 10.3897/mycokeys.94.96782. eCollection 2022.

本文引用的文献

4
MALDI-TOF MS-based identification of black yeasts of the genus Exophiala.
Med Mycol. 2015 May;53(4):347-52. doi: 10.1093/mmy/myu093.
8
Black yeast habitat choices and species spectrum on high altitude creosote-treated railway ties.
Fungal Biol. 2013 Oct;117(10):692-6. doi: 10.1016/j.funbio.2013.07.006. Epub 2013 Aug 11.
9
In vitro activities of eight antifungal drugs against 106 waterborne and cutaneous exophiala species.
Antimicrob Agents Chemother. 2013 Dec;57(12):6395-8. doi: 10.1128/AAC.01629-13. Epub 2013 Oct 7.
10
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验