Iki Taichiro, Tschopp Marie-Aude, Voinnet Olivier
Department of Biology, Swiss Federal Institute of Technology (ETH), 8092 Zürich, Switzerland.
RNA. 2017 May;23(5):639-654. doi: 10.1261/rna.060434.116. Epub 2017 Feb 1.
Phytoviruses encode viral suppressors of RNA silencing (VSRs) to counteract the plant antiviral silencing response, which relies on virus-derived small interfering (si)RNAs processed by Dicer RNaseIII enzymes and subsequently loaded into ARGONAUTE (AGO) effector proteins. Here, a tobacco cell-free system was engineered to recapitulate the key steps of antiviral RNA silencing and, in particular, the most upstream double-stranded (ds)RNA processing reaction, not kinetically investigated thus far in the context of plant VSR studies. Comparative biochemical analyses of distinct VSRs in the reconstituted assay showed that in all cases tested, VSR interactions with siRNA duplexes inhibited the loading, but not the activity, of antiviral AGO1 and AGO2. Turnip crinkle virus P38 displayed the additional and unique property to bind both synthetic and RNA-dependent-RNA-polymerase-generated long dsRNAs, and inhibited the processing into siRNAs. Single amino acid substitutions in P38 could dissociate dsRNA-processing from AGO-loading inhibition in vitro and in vivo, illustrating dual-inhibitory strategies discriminatively deployed within a single viral protein, which, we further show, are bona fide suppressor functions that evolved independently of the conserved coat protein function of P38.
植物病毒编码RNA沉默的病毒抑制子(VSRs)来对抗植物的抗病毒沉默反应,这种反应依赖于由Dicer RNaseIII酶加工产生的病毒来源的小干扰(si)RNA,随后装载到AGO(AGO)效应蛋白中。在这里,我们构建了一个烟草无细胞系统来重现抗病毒RNA沉默的关键步骤,特别是最上游的双链(ds)RNA加工反应,到目前为止,在植物VSR研究的背景下,尚未对其进行动力学研究。在重组试验中对不同VSRs的比较生化分析表明,在所有测试的情况下,VSR与siRNA双链体的相互作用抑制了抗病毒AGO1和AGO2的装载,但不抑制其活性。芜菁皱缩病毒P38表现出额外的独特特性,它既能结合合成的dsRNA,也能结合依赖RNA的RNA聚合酶产生的长dsRNA,并抑制其加工成siRNA。P38中的单氨基酸替换可以在体外和体内将dsRNA加工与AGO装载抑制分开,这说明了在单个病毒蛋白中差异性部署的双重抑制策略,我们进一步表明,这些策略是真正的抑制子功能,其进化独立于P38保守的衣壳蛋白功能。