de Oliveira Paulo McMiller C, Silva Juliana A B, Longo Ricardo L
Departamento de Química Fundamental, Universidade Federal de Pernambuco, 50740-540, Recife, PE, Brazil.
Centro Acadêmico do Agreste, Universidade Federal de Pernambuco, 55002-970, Caruaru, PE, Brazil.
J Mol Model. 2017 Feb;23(2):56. doi: 10.1007/s00894-017-3235-x. Epub 2017 Feb 4.
Hydrogen cyanide (HCN) and its tautomer hydrogen isocyanide (HNC) are relevant for extraterrestrial chemistry and possible relation to the origin of biomolecules. Several processes and reactions involving these molecules depend on their intermolecular interactions that can lead to aggregates and liquids especially due to the hydrogen bonds. It is thus important to comprehend, to describe, and to quantify their hydrogen bonds, mainly their nature and the cooperativity effects. A systematic study of all linear complexes up to pentamers of HCN and HNC is presented. CCSD(T)/CBS energy calculations, with and without basis set superposition error (BSSE) corrections for energies and geometries, provided a suitable set of benchmarks. Approximated methods based on the density functional theory (DFT) such as BP86, PBE, TPSS, B3LYP, CAM-B3LYP with and without dispersion corrections and long-range corrections, were assessed to describe the interaction energies and cooperativity effects. These assessments are relevant to select DFT functionals for liquid simulations. Energy decomposition analysis was performed at the PBE/STO-TZ2P level and provided insights into the nature of the hydrogen bonds, which are dominated by the electrostatic component. In addition, several linear relationships between the various energy components and the interaction energy were obtained. The cooperativity energy was also found to be practically linear with respect to the interaction energy, which may be relevant for designing and/or correcting empirical force fields. Graphical Abstract Hydrogen bonds in HCN/HNC oligomeric complexesᅟ.
氰化氢(HCN)及其互变异构体异氰化氢(HNC)与地球外化学以及与生物分子起源的可能关系相关。涉及这些分子的几个过程和反应取决于它们的分子间相互作用,特别是由于氢键作用,这种相互作用可导致聚集体和液体的形成。因此,理解、描述和量化它们的氢键,主要是氢键的性质和协同效应非常重要。本文展示了对HCN和HNC直至五聚体的所有线性配合物的系统研究。CCSD(T)/CBS能量计算,包括有和没有对能量和几何结构进行基组叠加误差(BSSE)校正的情况,提供了一组合适的基准。评估了基于密度泛函理论(DFT)的近似方法,如BP86、PBE、TPSS、B3LYP、带有和不带有色散校正及长程校正的CAM-B3LYP,以描述相互作用能和协同效应。这些评估对于选择用于液体模拟的DFT泛函很有意义。在PBE/STO-TZ2P水平上进行了能量分解分析,深入了解了以静电成分为主的氢键的性质。此外,还获得了各种能量成分与相互作用能之间的几个线性关系。协同能也被发现与相互作用能实际上呈线性关系,这可能与设计和/或校正经验力场有关。图形摘要:HCN/HNC寡聚配合物中的氢键ᅟ 。