Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ Paris-Sud, Université Paris-Saclay, Gif-sur-Yvette cedex, France.
Institut Pasteur, Biophysique Moléculaire, Citech, UMR 3528, Paris, France.
Sci Rep. 2017 Feb 6;7:41662. doi: 10.1038/srep41662.
Bacteriophage capsids constitute icosahedral shells of exceptional stability that protect the viral genome. Many capsids display on their surface decoration proteins whose structure and function remain largely unknown. The decoration protein pb10 of phage T5 binds at the centre of the 120 hexamers formed by the major capsid protein. Here we determined the 3D structure of pb10 and investigated its capsid-binding properties using NMR, SAXS, cryoEM and SPR. Pb10 consists of an α-helical capsid-binding domain and an Ig-like domain exposed to the solvent. It binds to the T5 capsid with a remarkably high affinity and its binding kinetics is characterized by a very slow dissociation rate. We propose that the conformational exchange events observed in the capsid-binding domain enable rearrangements upon binding that contribute to the quasi-irreversibility of the pb10-capsid interaction. Moreover we show that pb10 binding is a highly cooperative process, which favours immediate rebinding of newly dissociated pb10 to the 120 hexamers of the capsid protein. In extreme conditions, pb10 protects the phage from releasing its genome. We conclude that pb10 may function to reinforce the capsid thus favouring phage survival in harsh environments.
噬菌体衣壳构成了具有极高稳定性的二十面体壳,保护着病毒基因组。许多衣壳表面展示着结构和功能仍知之甚少的装饰蛋白。噬菌体 T5 的装饰蛋白 pb10 结合在主要衣壳蛋白形成的 120 个六聚体的中心。在这里,我们确定了 pb10 的 3D 结构,并使用 NMR、SAXS、cryoEM 和 SPR 研究了其衣壳结合特性。Pb10 由一个α-螺旋衣壳结合结构域和一个暴露在溶剂中的 Ig 样结构域组成。它与 T5 衣壳具有极高的亲和力结合,其结合动力学的特征是解离速率非常缓慢。我们提出,在衣壳结合结构域中观察到的构象交换事件,在结合时能够进行重排,这有助于 pb10-衣壳相互作用的准不可逆性。此外,我们表明 pb10 结合是一个高度协同的过程,有利于新解离的 pb10 立即重新结合到衣壳蛋白的 120 个六聚体上。在极端条件下,pb10 可防止噬菌体释放其基因组。我们得出结论,pb10 可能具有增强衣壳的功能,从而有利于噬菌体在恶劣环境中的生存。