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系统发育树失衡中年龄依赖和谱系依赖的物种形成与灭绝

Age-Dependent and Lineage-Dependent Speciation and Extinction in the Imbalance of Phylogenetic Trees.

作者信息

Holman Eric W

机构信息

Department of Psychology, University of California, Los Angeles, CA 90095, USA.

出版信息

Syst Biol. 2017 Nov 1;66(6):912-916. doi: 10.1093/sysbio/syx031.

Abstract

It is known that phylogenetic trees are more imbalanced than expected from a birth-death model with constant rates of speciation and extinction, and also that imbalance can be better fit by allowing the rate of speciation to decrease as the age of the parent species increases. If imbalance is measured in more detail, at nodes within trees as a function of the number of species descended from the nodes, age-dependent models predict levels of imbalance comparable to real trees for small numbers of descendent species, but predicted imbalance approaches an asymptote not found in real trees as the number of descendent species becomes large. Age-dependence must therefore be complemented by another process such as inheritance of different rates along different lineages, which is known to predict insufficient imbalance at nodes with few descendent species, but can predict increasing imbalance with increasing numbers of descendent species. [Crump-Mode-Jagers process; diversification; macroevolution; taxon sampling; tree of life.].

摘要

众所周知,系统发育树比具有恒定物种形成和灭绝速率的生死模型所预期的更加不平衡,而且通过允许物种形成速率随着亲本物种年龄的增加而降低,可以更好地拟合这种不平衡。如果更详细地衡量不平衡,在树内的节点处作为从这些节点衍生的物种数量的函数,年龄依赖模型预测对于少量衍生物种,不平衡水平与真实树相当,但随着衍生物种数量变大,预测的不平衡接近真实树中未发现的渐近线。因此,年龄依赖性必须由另一个过程来补充,例如沿着不同谱系继承不同速率,已知这可以预测具有少量衍生物种的节点处不平衡不足,但可以预测随着衍生物种数量增加不平衡也增加。[克伦普 - 莫德 - 雅格尔斯过程;多样化;宏观进化;分类群抽样;生命之树。]

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