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中国东部汉族人群的遗传多态性和进化分化:KIR 全面而系统的比较分析。

Genetic polymorphism and evolutionary differentiation of Eastern Chinese Han: a comprehensive and comparative analysis on KIRs.

机构信息

Department of Forensic Medicine, Nanjing Medical University, Nanjing, Jiangsu, 210029, China.

Department of Cardiology, Affiliated Hospital of Jiangsu University, Zhenjiang, Jiangsu 212001, China.

出版信息

Sci Rep. 2017 Feb 16;7:42486. doi: 10.1038/srep42486.

Abstract

Killer cell immunoglobulin-like receptor genes, namely KIRs, cluster together within the 160 kb genomic DNA region. In this study, we used PCR-SSP approach and successfully identified the genotype of 17 KIR genes in 123 independent healthy donors residing in the Jiangsu province, China. All individuals were positive at the 7 genes. The observed carrier gene frequencies (OFs) of remaining 10 KIRs ranged from 14.63% (KIR2DS3) to 95.93% (KIR3DL1). We found 27 distinct genotypes excluding KIR1D. The most frequent occurred in 63 individuals (51.22%). The linkage disequilibrium analysis signified 29 positive and 6 negative relations in 45 pairwise comparisons. To study population differentiation, we drew a Heatmap based on the data of KIRs from 59 populations and conducted Hierarchical Clustering by Euclidean distances. We next validated our results by estimating pairwise D distances and illustrating a Neighbor-Joining tree, as well as a MDS plot covering 3 additional Chinese Han groups. The phylogenetic reconstruction and cluster analysis strongly indicated a genetically close relationship between Eastern and Jilin Hans. In conclusion, the present study provided a meritorious resource of KIR genotyping for population genetics, and could be helpful to uncover the genetic mechanism of KIRs in immune disease in the future.

摘要

杀伤细胞免疫球蛋白样受体基因,即 KIRs,聚集在 160kb 的基因组 DNA 区域内。在这项研究中,我们使用 PCR-SSP 方法成功鉴定了 123 名居住在中国江苏省的独立健康供体的 17 个 KIR 基因的基因型。所有个体在 7 个基因上均为阳性。其余 10 个 KIR 基因的观察到的携带基因频率(OF)范围从 14.63%(KIR2DS3)到 95.93%(KIR3DL1)。我们发现了 27 种不同的基因型,不包括 KIR1D。最常见的基因型出现在 63 个人中(51.22%)。连锁不平衡分析在 45 对比较中显示出 29 个阳性和 6 个阴性关系。为了研究种群分化,我们根据来自 59 个群体的 KIR 数据绘制了热图,并通过欧几里得距离进行了层次聚类。我们接下来通过估计成对 D 距离并绘制邻接聚类树以及一个包含 3 个额外中国汉族群体的 MDS 图来验证我们的结果。系统发育重建和聚类分析强烈表明,东部和吉林汉族之间存在遗传上的密切关系。总之,本研究为群体遗传学提供了有价值的 KIR 基因分型资源,并有助于揭示未来 KIRs 在免疫疾病中的遗传机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2be/5311978/065fa492318b/srep42486-f1.jpg

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